From 68f6d8b0659c0d1cab73ce7061c6389131d211e9 Mon Sep 17 00:00:00 2001 From: fscarlier Date: Wed, 6 Mar 2024 12:37:22 +0100 Subject: [PATCH 01/26] Added arc-by-arc corrections, and new .json lists --- omc3/check_corrections.py | 15 +- omc3/correction/arc_by_arc.py | 100 ++ omc3/correction/handler.py | 4 + omc3/correction/model_appenders.py | 12 +- omc3/correction/model_diff.py | 1 - omc3/definitions/optics.py | 1 + omc3/global_correction.py | 11 + .../correctors_b1/beta_correctors.json | 1439 ++++++++++------- .../correctors_b2/beta_correctors.json | 1410 +++++++++------- 9 files changed, 1817 insertions(+), 1176 deletions(-) create mode 100644 omc3/correction/arc_by_arc.py diff --git a/omc3/check_corrections.py b/omc3/check_corrections.py index bd9a7a272..9a19d74ea 100644 --- a/omc3/check_corrections.py +++ b/omc3/check_corrections.py @@ -245,7 +245,7 @@ from omc3.correction.response_twiss import PLANES from omc3.definitions.optics import ( OpticsMeasurement, ColumnsAndLabels, - FILE_COLUMN_MAPPING, RDT_COLUMN_MAPPING, TUNE_COLUMN + FILE_COLUMN_MAPPING, RDT_COLUMN_MAPPING, TUNE_COLUMN, TOTAL_PHASE_NAME, MU_COLUMN ) from omc3.global_correction import _get_default_values, CORRECTION_DEFAULTS, OPTICS_PARAMS_CHOICES from omc3.model import manager @@ -475,8 +475,10 @@ def _create_model_and_write_diff_to_measurements( diff_columns = ( list(OPTICS_PARAMS_CHOICES[:-4]) + [col for col in corr_model_elements.columns if col.startswith("F1")] + - list(PLANES) + list(PLANES) + + ['MUX', 'MUY'] ) + diff_models = diff_twiss_parameters(corr_model_elements, accel_inst.model, parameters=diff_columns) LOG.debug(f"Differences to nominal model calculated.") @@ -514,12 +516,17 @@ def _create_model_and_write_diff_to_measurements( LOG.debug(f"Checking correction for {attribute}") plane = filename[-1].upper() cols = colmap.set_plane(plane) + if filename[:-1] == TOTAL_PHASE_NAME: + model_cols = MU_COLUMN.set_plane(plane) + else: + model_cols = cols + _create_check_columns( measurement=measurement, output_measurement=output_measurement, diff_models=diff_models, colmap_meas=cols, - colmap_model=cols, + colmap_model=model_cols, attribute=attribute, rms_mask=rms_mask, ) @@ -571,7 +578,7 @@ def _create_check_columns(measurement: OpticsMeasurement, output_measurement: Op diff = diff_models.loc[df.index, colmap_model.delta_column] df[colmap_meas.diff_correction_column] = diff - if colmap_meas.column == PHASE: + if colmap_meas.column[:-1] == PHASE: df[colmap_meas.expected_column] = pd.to_numeric(ang_diff(df[colmap_meas.delta_column], diff)) # assumes period 1 df.headers[colmap_meas.delta_rms_header] = circular_rms(df[colmap_meas.delta_column], period=1) df.headers[colmap_meas.expected_rms_header] = circular_rms(df[colmap_meas.expected_column], period=1) diff --git a/omc3/correction/arc_by_arc.py b/omc3/correction/arc_by_arc.py new file mode 100644 index 000000000..028654dd6 --- /dev/null +++ b/omc3/correction/arc_by_arc.py @@ -0,0 +1,100 @@ +import pickle +import numpy as np +import pandas as pd + + +def identify_closest_arc_bpm_to_ip(ip, side, beam, bpms): + indices = range(1,15) + for ii in indices: + bpm = f'BPM.{ii}{side}{ip}.B{beam}' + if bpm in bpms: + return bpm + + +def get_left_right_pair(arc, beam, bpms): + left_of_arc = identify_closest_arc_bpm_to_ip(int(arc[0]), 'R', beam, bpms) + right_of_arc = identify_closest_arc_bpm_to_ip(int(arc[1]), 'L', beam, bpms) + return [left_of_arc, right_of_arc] + + +def get_arc_by_arc_bpm_pairs(meas_dict, include_ips=None): + bpms = meas_dict['PHASEX'].index + beam = bpms[0][-1] + bpm_pairs = {} + bpm_pairs_with_ips = {} + include_ips = False + + arcs_to_cycle = ['81', '12', '23', '34', '45', '56', '67', '78'] + + for lhc_arc in arcs_to_cycle: + bpm_pairs[lhc_arc] = get_left_right_pair(lhc_arc, beam, bpms) + + if include_ips == 'left': + bpm_pairs_with_ips['81'] = [bpm_pairs['78'][1], bpm_pairs['81'][1]] + bpm_pairs_with_ips['12'] = [bpm_pairs['81'][1], bpm_pairs['12'][1]] + bpm_pairs_with_ips['23'] = [bpm_pairs['12'][1], bpm_pairs['23'][1]] + bpm_pairs_with_ips['34'] = [bpm_pairs['23'][1], bpm_pairs['34'][1]] + bpm_pairs_with_ips['45'] = [bpm_pairs['34'][1], bpm_pairs['45'][1]] + bpm_pairs_with_ips['56'] = [bpm_pairs['45'][1], bpm_pairs['56'][1]] + bpm_pairs_with_ips['67'] = [bpm_pairs['56'][1], bpm_pairs['67'][1]] + bpm_pairs_with_ips['78'] = [bpm_pairs['67'][1], bpm_pairs['78'][1]] + bpm_pairs = bpm_pairs_with_ips + elif include_ips == 'right': + bpm_pairs_with_ips['81'] = [bpm_pairs['78'][0], bpm_pairs['81'][0]] + bpm_pairs_with_ips['12'] = [bpm_pairs['81'][0], bpm_pairs['12'][0]] + bpm_pairs_with_ips['23'] = [bpm_pairs['12'][0], bpm_pairs['23'][0]] + bpm_pairs_with_ips['34'] = [bpm_pairs['23'][0], bpm_pairs['34'][0]] + bpm_pairs_with_ips['45'] = [bpm_pairs['34'][0], bpm_pairs['45'][0]] + bpm_pairs_with_ips['56'] = [bpm_pairs['45'][0], bpm_pairs['56'][0]] + bpm_pairs_with_ips['67'] = [bpm_pairs['56'][0], bpm_pairs['67'][0]] + bpm_pairs_with_ips['78'] = [bpm_pairs['67'][0], bpm_pairs['78'][0]] + bpm_pairs = bpm_pairs_with_ips + + return bpm_pairs + + +def circular_sum_phase(phase_df, tune, bpm_pair, key): + idx_0 = phase_df[key].index.get_loc(bpm_pair[0]) + idx_1 = phase_df[key].index.get_loc(bpm_pair[1]) + if idx_0 > idx_1: + inverted_result = sum(phase_df[key][bpm_pair[1]:bpm_pair[0]]) + result = tune - inverted_result + else: + result = sum(phase_df[key][bpm_pair[0]:bpm_pair[1]]) + return result + + +def circular_sum_phase_error(phase_df, bpm_pair): + idx_0 = phase_df['ERROR'].index.get_loc(bpm_pair[0]) + idx_1 = phase_df['ERROR'].index.get_loc(bpm_pair[1]) + if idx_0 > idx_1: + selection = pd.concat([phase_df['ERROR'].loc[:bpm_pair[1]], phase_df['ERROR'].loc[bpm_pair[0]:]]) + result = np.sqrt(np.sum(selection**2)) + else: + result = np.sqrt(np.sum(phase_df['ERROR'][bpm_pair[0]:bpm_pair[1]]**2)) + return result + +def get_arc_phases(bpm_pairs, meas_dict, tune, plane): + arc_meas = [] + for arc, bpm_pair in bpm_pairs.items(): + results = {} + results['NAME'] = bpm_pair[0] + results['NAME2'] = bpm_pair[1] + results['WEIGHT'] = meas_dict[f'PHASE{plane}'].loc[bpm_pair[0], 'WEIGHT'] + results['VALUE'] = circular_sum_phase(meas_dict[f'PHASE{plane}'], tune, bpm_pair, 'VALUE') + results['MODEL'] = circular_sum_phase(meas_dict[f'PHASE{plane}'], tune, bpm_pair, 'MODEL') + results['ERROR'] = circular_sum_phase_error(meas_dict[f'PHASE{plane}'], bpm_pair) + results['DIFF'] = results['VALUE'] - results['MODEL'] + arc_meas.append(results) + + meas_dict[f'PHASE{plane}'] = pd.DataFrame(arc_meas).set_index('NAME') + + return meas_dict + + +def reduce_to_arc_extremities(meas_dict, nominal_model, ats=False): + bpm_pairs_x = get_arc_by_arc_bpm_pairs(meas_dict, ats=ats) + bpm_pairs_y = get_arc_by_arc_bpm_pairs(meas_dict, ats=ats) + meas_dict = get_arc_phases(bpm_pairs_x, meas_dict, nominal_model.headers['Q1'], 'X') + meas_dict = get_arc_phases(bpm_pairs_y, meas_dict, nominal_model.headers['Q2'], 'Y') + return meas_dict diff --git a/omc3/correction/handler.py b/omc3/correction/handler.py index eb75a1f7d..34cb33da7 100644 --- a/omc3/correction/handler.py +++ b/omc3/correction/handler.py @@ -18,6 +18,7 @@ import omc3.madx_wrapper as madx_wrapper from omc3.correction import filters, model_appenders, response_twiss +import omc3.correction.arc_by_arc as abba from omc3.optics_measurements.constants import (BETA, DELTA, DISPERSION, F1001, F1010, NORM_DISPERSION, PHASE, TUNE, DISPERSION_NAME, EXT, REAL, IMAG, @@ -63,6 +64,9 @@ def correct(accel_inst: Accelerator, opt: DotDict) -> None: meas_dict = filters.filter_measurement(optics_params, meas_dict, nominal_model, opt) meas_dict = model_appenders.add_differences_to_model_to_measurements(nominal_model, meas_dict) + if opt.arc_by_arc_phase and accel_inst.NAME == 'lhc': + meas_dict = abba.reduce_to_arc_extremities(meas_dict, nominal_model, ats=False) + resp_dict = filters.filter_response_index(resp_dict, meas_dict, optics_params) resp_matrix = _join_responses(resp_dict, optics_params, vars_list) delta = tfs.TfsDataFrame(0., index=vars_list, columns=[DELTA]) diff --git a/omc3/correction/model_appenders.py b/omc3/correction/model_appenders.py index 29687caf7..11a079b5d 100644 --- a/omc3/correction/model_appenders.py +++ b/omc3/correction/model_appenders.py @@ -67,10 +67,16 @@ def _get_model_generic(model: pd.DataFrame, meas: pd.DataFrame, key: str) -> pd. def _get_model_phases(model: pd.DataFrame, meas: pd.DataFrame, key: str) -> pd.DataFrame: - model_column = f"{PHASE_ADV}{key[-1]}" + plane = key[-1] + tunes = {'X':model.headers['Q1'], + 'Y':model.headers['Q2'], + } + model_column = f"{PHASE_ADV}{plane}" with logging_tools.log_pandas_settings_with_copy(LOG.debug): - meas[MODEL] = (model.loc[meas["NAME2"].to_numpy(), model_column].to_numpy() - - model.loc[meas.index.to_numpy(), model_column].to_numpy()) + model_phases_advances = (model.loc[meas["NAME2"].to_numpy(), model_column].to_numpy() - + model.loc[meas.index.to_numpy(), model_column].to_numpy()) + model_phases_advances[model_phases_advances < 0] += tunes[plane] + meas[MODEL] = model_phases_advances meas[DIFF] = df_diff(meas, VALUE, MODEL) return meas diff --git a/omc3/correction/model_diff.py b/omc3/correction/model_diff.py index b36f9baf7..45387f541 100644 --- a/omc3/correction/model_diff.py +++ b/omc3/correction/model_diff.py @@ -54,7 +54,6 @@ def _get_mapping(): return defaultdict( lambda: _diff, { - PHASE_ADV: _phase_advance_diff, PHASE: _phase_advance_diff, BETA: _beta_beating, NORM_DISPERSION: _normalized_dispersion_diff, diff --git a/omc3/definitions/optics.py b/omc3/definitions/optics.py index b6a7502d8..c292843fd 100644 --- a/omc3/definitions/optics.py +++ b/omc3/definitions/optics.py @@ -195,6 +195,7 @@ def delta_label(self): NORM_DISPERSION_COLUMN = ColumnsAndLabels(NORM_DISPERSION, _label=ylabels['norm_dispersion'], _text_label='normalized dispersion') PHASE_COLUMN = ColumnsAndLabels(PHASE, _label=ylabels['phase'], _text_label='phase') TOTAL_PHASE_COLUMN = ColumnsAndLabels(PHASE, _label=ylabels['phase'], _text_label='total phase') +MU_COLUMN = ColumnsAndLabels(PHASE_ADV, _label=ylabels['phasetot'], _text_label='total phase') PHASE_ADVANCE_COLUMN = ColumnsAndLabels(f'{PHASE_ADV}{{0}}{MDL}', _label=r'Phase Advance [$2 \pi$]', _text_label='phase advance') S_COLUMN = ColumnsAndLabels(S, _label='Location [m]', _text_label='longitudinal location', needs_plane=False) diff --git a/omc3/global_correction.py b/omc3/global_correction.py index dde073018..08c564516 100644 --- a/omc3/global_correction.py +++ b/omc3/global_correction.py @@ -194,6 +194,8 @@ "beta_filename": "beta_phase_", "method": "pinv", "iterations": 4, + "arc_by_arc_phase": False, + "include_ips": None, } @@ -272,6 +274,15 @@ def correction_params(): params.add_parameter(name="update_response", action="store_true", help="Update the (analytical) response per iteration.", ) + params.add_parameter(name="arc_by_arc_phase", + type=bool, + default=CORRECTION_DEFAULTS["arc_by_arc_phase"], + help="Set to True for arc-by-arc total pahse correction.", ) + params.add_parameter(name="include_ips", + type=str, + choices=("left", "right"), + default=CORRECTION_DEFAULTS["include_ips"], + help="Include ips left or right of arcs in arcs.", ) return params diff --git a/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json b/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json index 0522e7d5c..166293bb0 100644 --- a/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json +++ b/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json @@ -1,596 +1,847 @@ { - "MQ": [ - "kqf.a12", - "kqd.a12", - "kqd.a23", - "kqf.a23", - "kqf.a34", - "kqd.a34", - "kqd.a45", - "kqf.a45", - "kqf.a56", - "kqd.a56", - "kqd.a67", - "kqf.a67", - "kqf.a78", - "kqd.a78", - "kqd.a81", - "kqf.a81" - ], - "MQM": [ - "kq6.l3b1", - "kq6.r3b1", - "kq7.r1b1", - "kq8.r1b1", - "kq9.r1b1", - "kq10.r1b1", - "kq10.l2b1", - 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"kqt12.r5b1", + "kqt13.l1b1", + "kqt13.l5b1", + "kqt13.r1b1", + "kqt13.r5b1", + "kqtl11.l1b1", + "kqtl11.l5b1", + "kqtl11.r1b1", + "kqtl11.r5b1" + ], + "QIP2": [ + "kq10.l2b1", + "kq10.r2b1", + "kq4.l2b1", + "kq4.r2b1", + "kq5.l2b1", + "kq5.r2b1", + "kq6.l2b1", + "kq6.r2b1", + "kq7.l2b1", + "kq7.r2b1", + "kq8.l2b1", + "kq8.r2b1", + "kq9.l2b1", + "kq9.r2b1", + "kqt12.l2b1", + "kqt12.r2b1", + "kqt13.l2b1", + "kqt13.r2b1", + "kqtl11.l2b1", + "kqtl11.r2b1" + ] } diff --git a/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json b/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json index 6d7b3e82e..07fc4a719 100644 --- a/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json +++ b/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json @@ -1,576 +1,838 @@ { - "MQ": [ - "kqd.a12", - "kqf.a12", - "kqf.a23", - "kqd.a23", - "kqd.a34", - "kqf.a34", - "kqf.a45", - "kqd.a45", - "kqd.a56", - "kqf.a56", - "kqf.a67", - "kqd.a67", - "kqd.a78", - "kqf.a78", - "kqf.a81", - "kqd.a81" - ], - "MQM": [ - "kq7.r1b2", - "kq8.r1b2", - "kq9.r1b2", - "kq10.r1b2", - "kq10.l2b2", - "kq9.l2b2", - "kq8.l2b2", - "kq7.l2b2", - "kq6.l2b2", - "kq5.r2b2", - "kq6.r2b2", - "kq7.r2b2", - "kq8.r2b2", - "kq9.r2b2", - "kq10.r2b2", - "kq10.l4b2", - "kq9.l4b2", - "kq8.l4b2", - "kq7.l4b2", - "kq7.r4b2", - "kq8.r4b2", - "kq9.r4b2", - "kq10.r4b2", - "kq10.l5b2", - "kq9.l5b2", - "kq8.l5b2", - "kq7.l5b2", - "kq7.r5b2", - "kq8.r5b2", - "kq9.r5b2", - "kq10.r5b2", - "kq10.l6b2", - "kq9.l6b2", - "kq8.l6b2", - "kq8.r6b2", - "kq9.r6b2", - "kq10.r6b2", - "kq10.l8b2", - "kq9.l8b2", - "kq8.l8b2", - "kq7.l8b2", - "kq6.l8b2", - "kq5.l8b2", - "kq6.r8b2", - "kq7.r8b2", - "kq8.r8b2", - "kq9.r8b2", - "kq6.l3b2", - "kq6.r3b2", - "kq10.r8b2", - "kq10.l1b2", - "kq9.l1b2", - "kq8.l1b2", - "kq7.l1b2" - ], - "MQM_HB": [ - "kq8.r1b2", - "kq9.r1b2", - "kq10.r1b2", - "kq10.l2b2", - "kq9.l2b2", - "kq8.l2b2", - "kq7.l2b2", - "kq6.l2b2", - "kq5.r2b2", - "kq6.r2b2", - "kq7.r2b2", - "kq8.r2b2", - "kq9.r2b2", - "kq10.r2b2", - "kq10.l4b2", - "kq9.l4b2", - "kq8.l4b2", - "kq7.l4b2", - "kq7.r4b2", - "kq8.r4b2", - "kq9.r4b2", - "kq10.r4b2", - "kq10.l5b2", - "kq9.l5b2", - "kq8.l5b2", - "kq8.r5b2", - "kq9.r5b2", - "kq10.r5b2", - "kq10.l6b2", - "kq9.l6b2", - "kq8.l6b2", - "kq8.r6b2", - "kq9.r6b2", - "kq10.r6b2", - "kq10.l8b2", - "kq9.l8b2", - "kq8.l8b2", - "kq7.l8b2", - "kq6.l8b2", - "kq5.l8b2", - "kq6.r8b2", - "kq7.r8b2", - "kq8.r8b2", - "kq9.r8b2", - "kq6.l3b2", - "kq6.r3b2", - "kq10.r8b2", - "kq10.l1b2", - "kq9.l1b2", - "kq8.l1b2" - ], - "MQM_Q5Q6Q7": [ - "kq5.r1b2", - "kq6.r1b2", - "kq7.r1b2", - "kq8.r1b2", - "kq9.r1b2", - "kq10.r1b2", - "kq10.l2b2", - "kq9.l2b2", - "kq8.l2b2", - "kq7.l2b2", - "kq6.l2b2", - "kq5.r2b2", - "kq6.r2b2", - "kq7.r2b2", - "kq8.r2b2", - "kq9.r2b2", - "kq10.r2b2", - "kq10.l4b2", - "kq9.l4b2", - "kq8.l4b2", - "kq7.l4b2", - "kq7.r4b2", - "kq8.r4b2", - "kq9.r4b2", - "kq10.r4b2", - "kq10.l5b2", - "kq9.l5b2", - "kq8.l5b2", - "kq7.l5b2", - "kq6.l5b2", - "kq5.l5b2", - "kq5.r5b2", - "kq6.r5b2", - "kq7.r5b2", - "kq8.r5b2", - "kq9.r5b2", - "kq10.r5b2", - "kq10.l6b2", - "kq9.l6b2", - "kq8.l6b2", - "kq8.r6b2", - "kq9.r6b2", - "kq10.r6b2", - "kq10.l8b2", - "kq9.l8b2", - "kq8.l8b2", - "kq7.l8b2", - "kq6.l8b2", - "kq5.l8b2", - "kq6.r8b2", - "kq7.r8b2", - "kq8.r8b2", - "kq9.r8b2", - "kq6.l3b2", - "kq6.r3b2", - "kq10.r8b2", - "kq10.l1b2", - "kq9.l1b2", - "kq8.l1b2", - "kq7.l1b2", - "kq6.l1b2", - "kq5.l1b2" - ], - "MQT": [ - "kqt12.r1b2", - "kqt13.r1b2", - "kqt13.l2b2", - "kqt12.l2b2", - "kqt12.r2b2", - "kqt13.r2b2", - "kqt13.l3b2", - "kqt12.l3b2", - "kqt12.r3b2", - "kqt13.r3b2", - "kqt13.l4b2", - "kqt12.l4b2", - "kqt12.r4b2", - "kqt13.r4b2", - "kqt13.l5b2", - "kqt12.l5b2", - "kqt12.r5b2", - "kqt13.r5b2", - "kqt13.l6b2", - "kqt12.l6b2", - "kqt12.r6b2", - "kqt13.r6b2", - "kqt13.l7b2", - "kqt12.l7b2", - "kqt12.r7b2", - "kqt13.r7b2", - "kq6.l7b2", - "kq6.r7b2", - "kqt13.l8b2", - 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- "kq4.lr7", - "kqt4.l7", - "kqt4.r7", - "kqt5.r7" - ], - "MQY": [ - "kq5.l2b2", - "kq4.l2b2", - "kq4.r2b2", - "kq6.l4b2", - "kq5.l4b2", - "kq5.r4b2", - "kq6.r4b2", - "kq5.l6b2", - "kq5.r6b2", - "kq4.l8b2", - "kq4.r8b2" - ], - "MQY_Q4": [ - "kq4.r1b2", - "kq5.l2b2", - "kq4.l2b2", - "kq4.r2b2", - "kq6.l4b2", - "kq5.l4b2", - "kq5.r4b2", - "kq6.r4b2", - "kq4.l5b2", - "kq4.r5b2", - "kq5.l6b2", - "kq5.r6b2", - "kq4.l8b2", - "kq4.r8b2", - "kq4.l1b2" - ], - "Q": [ - "kq4.r1b2", - "kq5.r1b2", - "kq6.r1b2", - "kq7.r1b2", - "kq8.r1b2", - "kq9.r1b2", - "kq10.r1b2", - "kqd.a12", - "kqtl11.r1b2", - "kqt12.r1b2", - "kqf.a12", - "kqt13.r1b2", - "kqtf.a12b2", - "kqtd.a12b2", - "kqt13.l2b2", - "kqt12.l2b2", - "kqtl11.l2b2", - "kq10.l2b2", - "kq9.l2b2", - "kq8.l2b2", - "kq7.l2b2", - "kq6.l2b2", - "kq5.l2b2", - "kq4.l2b2", - "kq4.r2b2", - "kq5.r2b2", - "kq6.r2b2", - "kq7.r2b2", - "kq8.r2b2", - "kq9.r2b2", - "kq10.r2b2", - "kqf.a23", - "kqtl11.r2b2", - "kqt12.r2b2", - "kqd.a23", - "kqt13.r2b2", - 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"kqt12.l6b2", + "kqt12.l7b2", + "kqt12.l8b2", + "kqt12.r1b2", + "kqt12.r2b2", + "kqt12.r3b2", + "kqt12.r4b2", + "kqt12.r5b2", + "kqt12.r6b2", + "kqt12.r7b2", + "kqt12.r8b2", + "kqt13.l1b2", + "kqt13.l2b2", + "kqt13.l3b2", + "kqt13.l4b2", + "kqt13.l5b2", + "kqt13.l6b2", + "kqt13.l7b2", + "kqt13.l8b2", + "kqt13.r1b2", + "kqt13.r2b2", + "kqt13.r3b2", + "kqt13.r4b2", + "kqt13.r5b2", + "kqt13.r6b2", + "kqt13.r7b2", + "kqt13.r8b2", + "kqt4.l3", + "kqt4.l7", + "kqt4.r3", + "kqt4.r7", + "kqt5.l3", + "kqt5.l7", + "kqt5.r3", + "kqt5.r7", + "kqtd.a12b2", + "kqtd.a23b2", + "kqtd.a34b2", + "kqtd.a45b2", + "kqtd.a56b2", + "kqtd.a67b2", + "kqtd.a78b2", + "kqtd.a81b2", + "kqtf.a12b2", + "kqtf.a23b2", + "kqtf.a34b2", + "kqtf.a45b2", + "kqtf.a56b2", + "kqtf.a67b2", + "kqtf.a78b2", + "kqtf.a81b2", + "kqtl10.l3b2", + "kqtl10.l7b2", + "kqtl10.r3b2", + "kqtl10.r7b2", + "kqtl11.l1b2", + "kqtl11.l2b2", + "kqtl11.l3b2", + "kqtl11.l4b2", + "kqtl11.l5b2", + "kqtl11.l6b2", + "kqtl11.l7b2", + "kqtl11.l8b2", + "kqtl11.r1b2", + "kqtl11.r2b2", + "kqtl11.r3b2", + "kqtl11.r4b2", + "kqtl11.r5b2", + "kqtl11.r6b2", + "kqtl11.r7b2", + "kqtl11.r8b2", + "kqtl7.l3b2", + "kqtl7.l7b2", + "kqtl7.r3b2", + "kqtl7.r7b2", + "kqtl8.l3b2", + "kqtl8.l7b2", + "kqtl8.r3b2", + "kqtl8.r7b2", + "kqtl9.l3b2", + "kqtl9.l7b2", + "kqtl9.r3b2", + "kqtl9.r7b2" + ], + "QIP15": [ + "kq10.l1b2", + "kq10.l5b2", + "kq10.r1b2", + "kq10.r5b2", + "kq4.l1b2", + "kq4.l5b2", + "kq4.r1b2", + "kq4.r5b2", + "kq5.l1b2", + "kq5.l5b2", + "kq5.r1b2", + "kq5.r5b2", + "kq6.l1b2", + "kq6.l5b2", + "kq6.r1b2", + "kq6.r5b2", + "kq7.l1b2", + "kq7.l5b2", + "kq7.r1b2", + "kq7.r5b2", + "kq8.l1b2", + "kq8.l5b2", + "kq8.r1b2", + "kq8.r5b2", + "kq9.l1b2", + "kq9.l5b2", + "kq9.r1b2", + "kq9.r5b2", + "kqt12.l1b2", + "kqt12.l5b2", + "kqt12.r1b2", + "kqt12.r5b2", + "kqt13.l1b2", + "kqt13.l5b2", + "kqt13.r1b2", + "kqt13.r5b2", + "kqtl11.l1b2", + "kqtl11.l5b2", + "kqtl11.r1b2", + "kqtl11.r5b2" + ], + "QIP2": [ + "kq10.l2b2", + "kq10.r2b2", + "kq4.l2b2", + "kq4.r2b2", + "kq5.l2b2", + "kq5.r2b2", + "kq6.l2b2", + "kq6.r2b2", + "kq7.l2b2", + "kq7.r2b2", + "kq8.l2b2", + "kq8.r2b2", + "kq9.l2b2", + "kq9.r2b2", + "kqt12.l2b2", + "kqt12.r2b2", + "kqt13.l2b2", + "kqt13.r2b2", + "kqtl11.l2b2", + "kqtl11.r2b2" + ] } From 284544efc81527fbe1a77cab66e46629b1c3a046 Mon Sep 17 00:00:00 2001 From: fscarlier Date: Wed, 6 Mar 2024 12:56:23 +0100 Subject: [PATCH 02/26] fixed passing of opt for include_ips --- omc3/correction/arc_by_arc.py | 8 ++++---- omc3/correction/handler.py | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/omc3/correction/arc_by_arc.py b/omc3/correction/arc_by_arc.py index 028654dd6..f341e7aae 100644 --- a/omc3/correction/arc_by_arc.py +++ b/omc3/correction/arc_by_arc.py @@ -17,7 +17,7 @@ def get_left_right_pair(arc, beam, bpms): return [left_of_arc, right_of_arc] -def get_arc_by_arc_bpm_pairs(meas_dict, include_ips=None): +def get_arc_by_arc_bpm_pairs(meas_dict, opt): bpms = meas_dict['PHASEX'].index beam = bpms[0][-1] bpm_pairs = {} @@ -92,9 +92,9 @@ def get_arc_phases(bpm_pairs, meas_dict, tune, plane): return meas_dict -def reduce_to_arc_extremities(meas_dict, nominal_model, ats=False): - bpm_pairs_x = get_arc_by_arc_bpm_pairs(meas_dict, ats=ats) - bpm_pairs_y = get_arc_by_arc_bpm_pairs(meas_dict, ats=ats) +def reduce_to_arc_extremities(meas_dict, nominal_model, opt): + bpm_pairs_x = get_arc_by_arc_bpm_pairs(meas_dict, opt) + bpm_pairs_y = get_arc_by_arc_bpm_pairs(meas_dict, opt) meas_dict = get_arc_phases(bpm_pairs_x, meas_dict, nominal_model.headers['Q1'], 'X') meas_dict = get_arc_phases(bpm_pairs_y, meas_dict, nominal_model.headers['Q2'], 'Y') return meas_dict diff --git a/omc3/correction/handler.py b/omc3/correction/handler.py index 34cb33da7..0d39b9c98 100644 --- a/omc3/correction/handler.py +++ b/omc3/correction/handler.py @@ -65,7 +65,7 @@ def correct(accel_inst: Accelerator, opt: DotDict) -> None: meas_dict = model_appenders.add_differences_to_model_to_measurements(nominal_model, meas_dict) if opt.arc_by_arc_phase and accel_inst.NAME == 'lhc': - meas_dict = abba.reduce_to_arc_extremities(meas_dict, nominal_model, ats=False) + meas_dict = abba.reduce_to_arc_extremities(meas_dict, nominal_model, opt) resp_dict = filters.filter_response_index(resp_dict, meas_dict, optics_params) resp_matrix = _join_responses(resp_dict, optics_params, vars_list) From 49354ae6685de1baa5844b21e8923c398346d190 Mon Sep 17 00:00:00 2001 From: fscarlier Date: Fri, 8 Mar 2024 11:16:58 +0100 Subject: [PATCH 03/26] minor import removal --- omc3/correction/arc_by_arc.py | 1 - 1 file changed, 1 deletion(-) diff --git a/omc3/correction/arc_by_arc.py b/omc3/correction/arc_by_arc.py index f341e7aae..da6bfac23 100644 --- a/omc3/correction/arc_by_arc.py +++ b/omc3/correction/arc_by_arc.py @@ -1,4 +1,3 @@ -import pickle import numpy as np import pandas as pd From 2cf34004483d3c08b371a68cd8b67e1392c8c6ba Mon Sep 17 00:00:00 2001 From: fscarlier Date: Fri, 8 Mar 2024 14:46:52 +0100 Subject: [PATCH 04/26] small fixes, renaming of parameters, +fake arcbyarc test data --- omc3/correction/arc_by_arc.py | 5 +- omc3/global_correction.py | 8 +- .../correctors_b1/beta_correctors.json | 4 +- .../correctors_b2/beta_correctors.json | 4 +- .../correction/inj_beam1/generate_twiss.madx | 15 + .../inj_beam1/twiss_mqt_quadrupole_error.dat | 605 ++++++++++++++++++ .../correction/inj_beam2/generate_twiss.madx | 15 + .../inj_beam2/twiss_mqt_quadrupole_error.dat | 605 ++++++++++++++++++ ...changeparameters_injb1_mqt_quadrupole.madx | 5 + ...changeparameters_injb2_mqt_quadrupole.madx | 5 + 10 files changed, 1260 insertions(+), 11 deletions(-) create mode 100644 tests/inputs/correction/inj_beam1/twiss_mqt_quadrupole_error.dat create mode 100644 tests/inputs/correction/inj_beam2/twiss_mqt_quadrupole_error.dat create mode 100644 tests/inputs/correction_test/changeparameters_injb1_mqt_quadrupole.madx create mode 100644 tests/inputs/correction_test/changeparameters_injb2_mqt_quadrupole.madx diff --git a/omc3/correction/arc_by_arc.py b/omc3/correction/arc_by_arc.py index da6bfac23..be97a73bd 100644 --- a/omc3/correction/arc_by_arc.py +++ b/omc3/correction/arc_by_arc.py @@ -21,14 +21,13 @@ def get_arc_by_arc_bpm_pairs(meas_dict, opt): beam = bpms[0][-1] bpm_pairs = {} bpm_pairs_with_ips = {} - include_ips = False arcs_to_cycle = ['81', '12', '23', '34', '45', '56', '67', '78'] for lhc_arc in arcs_to_cycle: bpm_pairs[lhc_arc] = get_left_right_pair(lhc_arc, beam, bpms) - if include_ips == 'left': + if opt.include_ips_in_arc_by_arc == 'left': bpm_pairs_with_ips['81'] = [bpm_pairs['78'][1], bpm_pairs['81'][1]] bpm_pairs_with_ips['12'] = [bpm_pairs['81'][1], bpm_pairs['12'][1]] bpm_pairs_with_ips['23'] = [bpm_pairs['12'][1], bpm_pairs['23'][1]] @@ -38,7 +37,7 @@ def get_arc_by_arc_bpm_pairs(meas_dict, opt): bpm_pairs_with_ips['67'] = [bpm_pairs['56'][1], bpm_pairs['67'][1]] bpm_pairs_with_ips['78'] = [bpm_pairs['67'][1], bpm_pairs['78'][1]] bpm_pairs = bpm_pairs_with_ips - elif include_ips == 'right': + elif opt.include_ips_in_arc_by_arc == 'right': bpm_pairs_with_ips['81'] = [bpm_pairs['78'][0], bpm_pairs['81'][0]] bpm_pairs_with_ips['12'] = [bpm_pairs['81'][0], bpm_pairs['12'][0]] bpm_pairs_with_ips['23'] = [bpm_pairs['12'][0], bpm_pairs['23'][0]] diff --git a/omc3/global_correction.py b/omc3/global_correction.py index 08c564516..d9be456a7 100644 --- a/omc3/global_correction.py +++ b/omc3/global_correction.py @@ -195,7 +195,7 @@ "method": "pinv", "iterations": 4, "arc_by_arc_phase": False, - "include_ips": None, + "include_ips_in_arc_by_arc": None, } @@ -278,11 +278,11 @@ def correction_params(): type=bool, default=CORRECTION_DEFAULTS["arc_by_arc_phase"], help="Set to True for arc-by-arc total pahse correction.", ) - params.add_parameter(name="include_ips", + params.add_parameter(name="include_ips_in_arc_by_arc", type=str, choices=("left", "right"), - default=CORRECTION_DEFAULTS["include_ips"], - help="Include ips left or right of arcs in arcs.", ) + default=CORRECTION_DEFAULTS["include_ips_in_arc_by_arc"], + help="If not specified only takes pure arcs. Otherwise it includes IPs left or right of arcs.", ) return params diff --git a/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json b/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json index 166293bb0..c693b0687 100644 --- a/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json +++ b/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json @@ -100,7 +100,7 @@ "kq9.r6b1", "kq9.r8b1" ], - "2024_MQM_INJ": [ + "MQM_INJ_2024": [ "kq10.l1b1", "kq10.l2b1", "kq10.l4b1", @@ -181,7 +181,7 @@ "kq9.r6b1", "kq9.r8b1" ], - "2024_MQM_TOP": [ + "MQM_TOP_2024": [ "kq10.l1b1", "kq10.l2b1", "kq10.l4b1", diff --git a/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json b/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json index 07fc4a719..42fbd9eec 100644 --- a/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json +++ b/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json @@ -99,7 +99,7 @@ "kq9.r6b2", "kq9.r8b2" ], - "2024_MQM_INJ": [ + "MQM_INJ_2024": [ "kq10.l1b2", "kq10.l2b2", "kq10.l4b2", @@ -179,7 +179,7 @@ "kq9.r6b2", "kq9.r8b2" ], - "2024_MQM_TOP": [ + "MQM_TOP_2024": [ "kq10.l1b2", "kq10.l2b2", "kq10.l4b2", diff --git a/tests/inputs/correction/inj_beam1/generate_twiss.madx b/tests/inputs/correction/inj_beam1/generate_twiss.madx index 11fba0c88..5411461e8 100644 --- a/tests/inputs/correction/inj_beam1/generate_twiss.madx +++ b/tests/inputs/correction/inj_beam1/generate_twiss.madx @@ -34,3 +34,18 @@ exec, do_twiss_monitors(LHCB1, 'twiss_skew_quadrupole_error.dat', 0.0); kqs.l2b1 = kqs.l2b1 - 0.0001; kqs.l6b1 = kqs.l6b1 + 0.00023; + + +! MQT Quadrupole Error +kqtf.a23b1 = kqtf.a23b1 -2.5e-04; +kqtf.a34b1 = kqtf.a34b1 +5.6e-05; +kqtd.a67b1 = kqtd.a67b1 +3.6e-05; +kqtf.a78b1 = kqtf.a78b1 +4.8e-05; + +exec, do_twiss_monitors(LHCB1, 'twiss_mqt_quadrupole_error.dat', 0.0); + +kqtf.a23b1 = kqtf.a23b1 +2.5e-04; +kqtf.a34b1 = kqtf.a34b1 -5.6e-05; +kqtd.a67b1 = kqtd.a67b1 -3.6e-05; +kqtf.a78b1 = kqtf.a78b1 -4.8e-05; + diff --git a/tests/inputs/correction/inj_beam1/twiss_mqt_quadrupole_error.dat b/tests/inputs/correction/inj_beam1/twiss_mqt_quadrupole_error.dat new file mode 100644 index 000000000..c4cdedc1b --- /dev/null +++ b/tests/inputs/correction/inj_beam1/twiss_mqt_quadrupole_error.dat @@ -0,0 +1,605 @@ +@ NAME %05s "TWISS" +@ TYPE %05s "TWISS" +@ SEQUENCE %05s "LHCB1" +@ PARTICLE %06s "PROTON" +@ MASS %le 0.9382720882 +@ CHARGE %le 1 +@ ENERGY %le 450 +@ PC %le 449.9990218 +@ GAMMA %le 479.6050162 +@ KBUNCH %le 1 +@ BCURRENT %le 0.0002071977796 +@ SIGE %le 0.001 +@ SIGT %le 1 +@ NPART %le 1.15e+11 +@ EX %le 1 +@ EY %le 1 +@ ET %le 0.001 +@ BV_FLAG %le 1 +@ LENGTH %le 26658.8832 +@ ALFA %le 0.0003482985693 +@ ORBIT5 %le -0 +@ GAMMATR %le 53.58264585 +@ Q1 %le 62.27513472 +@ Q2 %le 60.30979951 +@ DQ1 %le 2.147377557 +@ DQ2 %le 2.120329055 +@ DXMAX %le 2.864025005 +@ DYMAX %le 0 +@ XCOMAX %le 9.586176533e-08 +@ YCOMAX %le 0 +@ BETXMAX %le 589.7304198 +@ BETYMAX %le 641.1758901 +@ XCORMS %le 2.695100195e-08 +@ YCORMS %le 0 +@ DXRMS %le 1.501142239 +@ DYRMS %le 0 +@ DELTAP %le 0 +@ SYNCH_1 %le 9.285250881 +@ SYNCH_2 %le 0.002244883795 +@ SYNCH_3 %le 7.99769003e-07 +@ SYNCH_4 %le 1.181073857e-06 +@ SYNCH_5 %le 2.369885992e-08 +@ SYNCH_6 %le 13.47303326 +@ SYNCH_8 %le 0.2783142782 +@ DQMIN %le 0 +@ DQMIN_PHASE %le 0 +@ TITLE %08s "no-title" +@ ORIGIN %17s "5.08.01 Darwin 64" +@ DATE %08s "08/03/24" +@ TIME %08s "14.23.22" +* NAME S BETX ALFX BETY ALFY MUX MUY DX DY DPX DPY X Y DDX DDY K1L K1SL K2L K3L K4L WX WY PHIX PHIY DMUX DMUY KEYWORD DBX DBY R11 R12 R21 R22 +$ %s %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %le %s %le %le %le %le %le %le + "BPMYB.5L2.B1" 28.288 193.8251973 4.275205439 23.94700959 -0.5274698267 0.02536180131 0.1393537746 -0.1923402147 0 0.00380046638 0 2.524797502e-08 0 -29.54882596 0 0 0 0 0 0 9.306491104 10.14578948 -0.2758777705 0.7115606508 0.0451340455 1.031558043 "MONITOR" 0 0 -0 -0 -0 -0 + "BPMYB.4L2.B1" 48.858 60.02621643 2.229363392 68.2323424 -1.625438915 0.05590025451 0.2243235235 -0.1141646138 0 0.00380046638 0 1.782158934e-08 0 -18.59383141 0 0 0 0 0 0 11.03361355 9.814534793 -0.1975691118 0.8647965652 -0.0176763688 0.746750292 "MONITOR" 0 0 -0 -0 -0 -0 + "BPMWI.4L2.B1" 73.3255 45.90692464 -0.3400503362 49.85279315 0.5977424172 0.1446803088 0.2838686114 -0.08648981248 0 0.001539339562 0 2.056218555e-08 0 -18.11745337 0 0 0 0 0 0 11.03054235 10.11082713 -0.01145649443 0.9864901316 -0.8526143834 0.1760018885 "MONITOR" 0 0 -0 -0 -0 -0 + "BPMSX.4L2.B1" 123.4825 141.1561018 -1.558970283 58.38417394 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24541.6236 33.54691506 0.5279454972 171.5743555 -2.353527721 57.20584182 55.58272731 1.093202958 0 -0.01440801801 0 -1.488014027e-10 0 -7.366943393 0 0 0 0 0 0 5.767934336 14.65218098 113.5479489 111.9664737 0.2731167864 0.8885156725 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.23R1.B1" 24595.07508 171.7175103 -2.354492001 33.44648496 0.5260954468 57.34182778 55.69670983 2.150820029 0 0.02971162828 0 3.214327384e-08 0 -35.21503595 0 0 0 0 0 0 7.049950977 16.11113808 113.8019769 112.2523046 0.4044008706 -0.2403084775 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.24R1.B1" 24648.52657 33.43092958 0.5269085499 171.8359267 -2.359473983 57.45577899 55.83291483 1.09360199 0 -0.01441291606 0 1.893431432e-08 0 -14.57056551 0 0 0 0 0 0 3.957426091 16.32655828 114.2437668 112.5393442 0.07909370215 1.072628111 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.25R1.B1" 24701.97805 171.6663579 -2.357329891 33.53175178 0.5286172627 57.59210947 55.94661601 2.151491999 0 0.02971727777 0 2.837134845e-08 0 -11.14509253 0 0 0 0 0 0 4.535144661 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9.926612091 14.86474324 117.4046658 115.5458023 -0.5425728678 2.131778471 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.31L2.B1" 25343.39586 171.6663556 -2.357329748 33.53175497 0.5286172737 59.09210948 57.446616 2.150207114 0 0.02969930151 0 -2.83713482e-08 0 16.45847744 0 0 0 0 0 0 11.33109148 12.72749451 117.6838521 115.7109885 0.4638427334 3.176478264 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.30L2.B1" 25396.84734 33.54691935 0.5279455401 171.5743515 -2.353527661 59.20584183 57.58272731 1.093202975 0 -0.01440802065 0 -1.488006898e-10 0 -4.245810056 0 0 0 0 0 0 4.389110261 13.06037802 117.862546 115.9651376 0.4252763698 2.133045363 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.29L2.B1" 25450.29883 171.7175114 -2.354491887 33.44648473 0.5260954201 59.34182778 57.69670983 2.15081992 0 0.02971162592 0 3.214327387e-08 0 -34.97845198 0 0 0 0 0 0 3.277063402 14.59134454 118.0940863 116.2573641 -0.2494677751 1.144233281 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.28L2.B1" 25503.75031 33.43092958 0.5269085499 171.8359267 -2.359473983 59.45577899 57.83291483 1.093601989 0 -0.01441291372 0 1.893431432e-08 0 -14.57148203 0 0 0 0 0 0 3.971792801 16.30339321 118.2436588 116.5392673 -0.5769335476 2.459607682 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.27L2.B1" 25557.2018 171.6663579 -2.357329891 33.53175178 0.5286172627 59.59210947 57.94661601 2.151492132 0 0.02971728027 0 2.837134848e-08 0 -11.14521593 0 0 0 0 0 0 4.547935261 14.30026154 118.5671894 116.7101155 -0.3767685531 3.643283952 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.26L2.B1" 25610.65328 33.54691595 0.5279455257 171.5743539 -2.353527801 59.70584184 58.08272733 1.093648538 0 -0.01442556448 0 1.488004781e-10 0 5.769651195 0 0 0 0 0 0 5.771533211 14.63297635 118.5479791 116.9662288 0.1325607355 2.499285942 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.25L2.B1" 25664.10477 171.7175061 -2.354491919 33.44648938 0.5260954867 59.84182779 58.19670984 2.150879066 0 0.02970495175 0 -3.2143275e-08 0 31.37292981 0 0 0 0 0 0 7.053616223 16.08567584 118.8020198 117.252188 0.2638677387 1.371239704 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.24L2.B1" 25717.55625 33.43093719 0.5269085999 171.8359204 -2.359473754 59.95577899 58.33291483 1.09324949 0 -0.01442066667 0 -1.89343154e-08 0 12.97331532 0 0 0 0 0 0 3.960119146 16.30010275 119.2436444 117.5392526 -0.06186365334 2.68092243 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.23L2.B1" 25771.00773 171.6663567 -2.357329633 33.53175474 0.5286172469 60.09210945 58.446616 2.150207042 0 0.02969930155 0 -2.837135035e-08 0 7.302451309 0 0 0 0 0 0 4.537151463 14.2975529 119.5672969 117.7101163 0.137281578 3.864362249 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.22L2.B1" 25824.45922 33.54691506 0.5279454972 171.5743555 -2.353527721 60.20584182 58.58272731 1.093203002 0 -0.01440801869 0 -1.488014272e-10 0 -7.366529416 0 0 0 0 0 0 5.763766073 14.62933146 119.54775 117.9662259 0.6455203609 2.720606724 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.21L2.B1" 25877.9107 171.7175103 -2.354492001 33.44648496 0.5260954468 60.34182778 58.69670983 2.150820095 0 0.02971162875 0 3.21432738e-08 0 -35.21352839 0 0 0 0 0 0 7.046619486 16.08167147 119.8018046 118.2521744 0.7773938644 1.592720618 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.20L2.B1" 25931.36219 33.66002967 0.5294803888 171.6158285 -2.356575033 60.4553117 58.83302711 1.097883416 0 -0.01433189004 0 1.899853985e-08 0 -14.64504355 0 0 0 0 0 0 3.947021681 16.29702868 120.2434133 118.5394204 0.4539983349 2.903490986 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.19L2.B1" 25984.81367 171.5792227 -2.349282999 33.63475036 0.5284748628 60.59106157 58.94660706 2.165260108 0 0.02990081406 0 2.85754126e-08 0 -11.38684327 0 0 0 0 0 0 4.495663539 14.29216505 120.5664942 118.7096831 0.6487482064 4.087000404 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.18L2.B1" 26038.26515 33.54594268 0.5273608643 171.5808832 -2.350456432 60.70483513 59.0824294 1.10228107 0 -0.01454035573 0 2.687668595e-10 0 5.651631151 0 0 0 0 0 0 5.83639805 14.65102122 120.5459426 118.9652557 1.161183342 2.950812866 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.17L2.B1" 26091.71664 171.7139115 -2.354447688 33.44652613 0.5261065698 60.84082324 59.19641109 2.163817837 0 0.0297968984 0 -3.196284127e-08 0 31.24070374 0 0 0 0 0 0 7.130816174 16.08148914 120.8007292 119.2518239 1.303120586 1.820137548 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.16L2.B1" 26145.16812 33.66010411 0.5294600444 171.6140108 -2.356550332 60.95430845 59.33272923 1.097613761 0 -0.01459826827 0 -1.899684386e-08 0 13.04411379 0 0 0 0 0 0 3.92647974 16.28508205 121.2416533 119.5391119 0.9779124066 3.127528531 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.15L2.B1" 26198.61961 171.582822 -2.349327186 33.63471595 0.5284637556 61.09005621 59.44630998 2.149368916 0 0.0296070596 0 -2.877723744e-08 0 7.687932447 0 0 0 0 0 0 4.463849157 14.29142056 121.565226 119.709421 1.167393075 4.312374689 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.14L2.B1" 26252.07109 33.54587965 0.5273813165 171.5826963 -2.350480845 61.20382845 59.58213145 1.093186699 0 -0.01439017108 0 -3.887195929e-10 0 -7.190696549 0 0 0 0 0 0 5.814792265 14.64073617 121.5458669 119.9649895 1.677647063 3.179389547 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.13L2.B1" 26305.52257 171.7103099 -2.354403118 33.44655982 0.5261176302 61.33981865 59.69611234 2.15071994 0 0.02970977524 0 3.17811319e-08 0 -35.04135674 0 0 0 0 0 0 7.104771613 16.05180868 121.8004074 120.2510798 1.819517907 2.044768094 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.12L2.B1" 26358.97406 40.71551072 0.5915965521 165.5073988 -2.276877508 61.44129833 59.8356722 1.219111269 0 -0.01203558296 0 2.079354802e-08 0 -16.81168784 0 0 0 0 0 0 3.845884236 16.28526297 122.2311676 120.5435308 1.527536902 3.389064515 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.11L2.B1" 26412.42554 173.3757114 -2.180713548 38.24841578 0.5352210126 61.56050643 59.94321189 2.533883133 0 0.03469402044 0 3.433325291e-08 0 -18.23753415 0 0 0 0 0 0 3.510043628 14.25970191 122.5374988 120.6923154 1.615734815 4.568167618 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.10L2.B1" 26464.26623 27.46453866 0.4872578027 176.6983402 -2.321732659 61.68433839 60.06067487 1.019623028 0 -0.02569215506 0 2.445095018e-09 0 3.27201502 0 0 0 0 0 0 6.915645304 15.83928561 122.5314614 120.9119545 2.221899285 3.845931587 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.9L2.B1" 26503.33322 104.9350391 -1.910785498 61.18053551 1.140601963 61.827415 60.11725433 1.085604048 0 0.009684630652 0 -2.301415233e-08 0 23.30867884 0 0 0 0 0 0 7.25980305 17.05912401 122.7813768 121.0213182 2.543852077 2.893829012 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.8L2.B1" 26543.79821 37.28904545 0.5166508119 154.2763357 -1.959657852 61.92491523 60.19416448 0.331336305 0 -0.01592917146 0 -1.959047002e-08 0 15.74033571 0 0 0 0 0 0 8.130535584 16.20425846 122.9908132 121.1804827 1.912216033 1.809304472 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.7L2.B1" 26582.8662 88.85085043 -1.303897352 117.350037 0.4992121682 62.05135687 60.23862545 0.05729729788 0 -0.000628325027 0 -2.561074929e-08 0 14.62632759 0 0 0 0 0 0 7.968089789 16.34878049 123.2660661 121.266805 1.149524398 1.648903594 "MONITOR" 0 0 -0 -0 -0 -0 + "BPMR.6L2.B1" 26614.9722 31.57274075 -0.3241741029 337.2034689 4.286402769 62.15349858 60.26418217 -0.01922139637 0 -0.002819172807 0 -6.079758783e-09 0 -0.1824836862 0 0 0 0 0 0 7.206616011 14.10217798 123.4508317 121.3391938 1.489434815 1.742478073 "MONITOR" 0 0 -0 -0 -0 -0 diff --git a/tests/inputs/correction/inj_beam2/generate_twiss.madx b/tests/inputs/correction/inj_beam2/generate_twiss.madx index 6e9ce4b7e..c6ed7e814 100644 --- a/tests/inputs/correction/inj_beam2/generate_twiss.madx +++ b/tests/inputs/correction/inj_beam2/generate_twiss.madx @@ -34,3 +34,18 @@ exec, do_twiss_monitors(LHCB2, 'twiss_skew_quadrupole_error.dat', 0.0); kqs.r2b2 = kqs.r2b2 + 0.0001; kqs.r6b2 = kqs.r6b2 - 0.00023; + + +! MQT Quadrupole Error +kqtf.a23b2 = kqtf.a23b2 -2.5e-04; +kqtf.a34b2 = kqtf.a34b2 +5.6e-05; +kqtd.a67b2 = kqtd.a67b2 +3.6e-05; +kqtf.a78b2 = kqtf.a78b2 +4.8e-05; + +exec, do_twiss_monitors(LHCB2, 'twiss_mqt_quadrupole_error.dat', 0.0); + +kqtf.a23b2 = kqtf.a23b2 +2.5e-04; +kqtf.a34b2 = kqtf.a34b2 -5.6e-05; +kqtd.a67b2 = kqtd.a67b2 -3.6e-05; +kqtf.a78b2 = kqtf.a78b2 -4.8e-05; + diff --git a/tests/inputs/correction/inj_beam2/twiss_mqt_quadrupole_error.dat b/tests/inputs/correction/inj_beam2/twiss_mqt_quadrupole_error.dat new file mode 100644 index 000000000..e49e0e95c --- /dev/null +++ b/tests/inputs/correction/inj_beam2/twiss_mqt_quadrupole_error.dat @@ -0,0 +1,605 @@ +@ NAME %05s "TWISS" +@ TYPE %05s "TWISS" +@ SEQUENCE %05s "LHCB2" +@ PARTICLE %06s "PROTON" +@ MASS %le 0.9382720882 +@ CHARGE %le 1 +@ ENERGY %le 450 +@ PC %le 449.9990218 +@ GAMMA %le 479.6050162 +@ KBUNCH %le 1 +@ BCURRENT %le 0.0002071977796 +@ SIGE %le 0.001 +@ SIGT %le 1 +@ NPART %le 1.15e+11 +@ EX %le 1 +@ EY %le 1 +@ ET %le 0.001 +@ BV_FLAG %le -1 +@ LENGTH %le 26658.8832 +@ ALFA %le 0.0003474570345 +@ ORBIT5 %le -0 +@ GAMMATR %le 53.64749472 +@ Q1 %le 62.27506006 +@ Q2 %le 60.30972878 +@ DQ1 %le 2.153488551 +@ DQ2 %le 2.125027607 +@ DXMAX %le 2.880226899 +@ DYMAX %le -0 +@ XCOMAX %le 9.375567132e-08 +@ YCOMAX %le 0 +@ BETXMAX %le 583.9983387 +@ BETYMAX %le 643.6287284 +@ XCORMS %le 2.733269677e-08 +@ YCORMS %le 0 +@ DXRMS %le 1.496873901 +@ DYRMS %le 0 +@ DELTAP %le 0 +@ SYNCH_1 %le -9.109964681 +@ SYNCH_2 %le 0.002244883795 +@ SYNCH_3 %le 7.99769003e-07 +@ SYNCH_4 %le -1.159054161e-06 +@ SYNCH_5 %le 2.49503633e-08 +@ SYNCH_6 %le 14.17003592 +@ SYNCH_8 %le 0.2931681775 +@ DQMIN %le 0 +@ DQMIN_PHASE %le 0 +@ TITLE %08s "no-title" +@ ORIGIN %17s "5.08.01 Darwin 64" +@ DATE %08s "08/03/24" +@ TIME %08s "14.27.14" +* NAME S BETX ALFX BETY ALFY MUX MUY DX DY DPX DPY X Y DDX DDY K1L K1SL K2L K3L K4L WX WY PHIX PHIY DMUX DMUY KEYWORD DBX DBY R11 R12 R21 R22 +$ %s %le %le %le %le %le %le %le %le %le 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112.4219165 -0.7900529476 0.3364058026 0.2866216821 0.2100240699 0 0.01075979206 0 -1.554219256e-08 0 1.318577401 0 -0 -0 -0 -0 -0 15.72918209 4.461317316 0.8695557997 0.8276373571 1.380449491 -0.2517156773 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.9R8.B2" 203.0919788 110.5262169 -2.780188032 29.58338532 0.4777439564 0.5755150709 0.395321659 1.011425074 0 0.02700237411 0 -1.079780388e-08 0 36.86206865 0 -0 -0 -0 -0 -0 15.36943994 5.788686195 1.379051904 1.060746105 -0.623928078 -0.8549944718 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.10R8.B2" 243.5569682 36.77543754 0.628798533 164.8882926 -3.005401366 0.6681757252 0.51017083 0.7065807295 0 -0.005530934214 0 7.597558497e-09 0 18.56566518 0 -0 -0 -0 -0 -0 14.09700517 4.927570312 1.565370801 1.350436836 0.5478270959 -1.185232019 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.11R8.B2" 295.3976576 178.6962065 -2.4441187 38.30897908 0.6203411357 0.7911745268 0.6114320415 1.780703066 0 0.0265646624 0 4.71838106e-08 0 11.71487874 0 -0 -0 -0 -0 -0 14.82463315 3.23532364 1.792350311 1.546847557 1.079854516 -0.9385359923 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.12R8.B2" 350.1241417 28.41092144 0.457344766 177.2926491 -2.259033702 0.9182467818 0.737029421 0.9748648348 0 -0.008525602618 0 2.009685118e-08 0 -9.833485908 0 -0 -0 -0 -0 -0 10.74407972 4.795432284 2.092841334 1.784802478 -0.1579407414 -0.9118690203 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.13R8.B2" 403.5756258 171.9242647 -2.527049792 33.53486043 0.5588387615 1.070837016 0.8486921806 2.154442726 0 0.03183495071 0 1.494038679e-08 0 -47.67541693 0 -0 -0 -0 -0 -0 10.4366894 2.632877646 2.422207837 2.246030257 -0.338119235 -1.132477595 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.14R8.B2" 457.0271099 33.59991482 0.5315175433 171.7001018 -2.356469525 1.18425899 0.9848534926 1.095608683 0 -0.01447943156 0 -9.430210125e-09 0 -17.37007022 0 -0 -0 -0 -0 -0 14.22075183 3.093766359 2.565774612 2.599065915 1.034052157 -1.067337901 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.15R8.B2" 510.478594 171.1143654 -2.345095589 33.59529697 0.5285197753 1.320420039 1.09848051 2.151386309 0 0.02967997725 0 -4.975701038e-08 0 -6.403302529 0 -0 -0 -0 -0 -0 15.38471182 3.893051883 2.828649424 2.515138849 1.393056835 -0.7789947294 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.16R8.B2" 563.9300781 33.59139774 0.5251457749 171.5091023 -2.350718959 1.434287255 1.234448525 1.095845806 0 -0.01438129969 0 -2.100995389e-08 0 10.94715278 0 -0 -0 -0 -0 -0 11.04520615 5.38042293 3.128644868 2.779851869 0.2028079886 -0.6751868396 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.17R8.B2" 617.3815622 172.180995 -2.359111969 33.48607923 0.5261407314 1.56990419 1.348377366 2.157569113 0 0.02979195961 0 -1.524404442e-08 0 43.78632328 0 -0 -0 -0 -0 -0 10.40497534 2.61742314 3.419671678 3.245833831 0.1728983026 -0.902118534 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.18R8.B2" 670.8330463 33.60114261 0.5315352724 171.6990544 -2.356457291 1.683322881 1.484542029 1.099268511 0 -0.01444188583 0 9.306618627e-09 0 15.79543331 0 -0 -0 -0 -0 -0 14.28426044 3.079176485 3.563902326 3.599406098 1.546105979 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0 -0 -0 -0 -0 -0 10.34391798 2.607407658 6.416774192 6.24509377 1.726520294 -0.2150804232 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.30R8.B2" 1312.250855 33.60238111 0.5315526878 171.697994 -2.356444938 3.182386841 2.984230596 1.095627298 0 -0.01448035865 0 -9.182708132e-09 0 -14.92680982 0 -0 -0 -0 -0 -0 8.586556371 4.349258712 6.655255199 6.557976905 2.546543139 -0.04554807903 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.31R8.B2" 1365.70234 171.2143731 -2.346336943 33.49029853 0.5273287737 3.318490084 3.098072684 2.15246483 0 0.02970016683 0 -4.958551556e-08 0 2.259219132 0 -0 -0 -0 -0 -0 9.168432877 4.727547412 6.903424897 6.565044941 2.132438832 0.3827557731 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.32R8.B2" 1419.153824 33.37593451 0.523308698 171.7119413 -2.356551902 3.432759058 3.234223872 1.092458156 0 -0.01446728988 0 -2.103177919e-08 0 13.90719995 0 -0 -0 -0 -0 -0 9.399164611 6.100816795 7.260434688 6.819061362 1.49290025 0.3861577169 "MONITOR" 0 0 -0 -0 -0 -0 + "BPM.33R8.B2" 1472.605308 172.1718503 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b/tests/inputs/correction_test/changeparameters_injb1_mqt_quadrupole.madx @@ -0,0 +1,5 @@ +kqtf.a23b1 = kqtf.a23b1 -2.5e-04; +kqtf.a34b1 = kqtf.a34b1 +5.6e-05; +kqtd.a67b1 = kqtd.a67b1 +3.6e-05; +kqtf.a78b1 = kqtf.a78b1 +4.8e-05; + diff --git a/tests/inputs/correction_test/changeparameters_injb2_mqt_quadrupole.madx b/tests/inputs/correction_test/changeparameters_injb2_mqt_quadrupole.madx new file mode 100644 index 000000000..f963eec5f --- /dev/null +++ b/tests/inputs/correction_test/changeparameters_injb2_mqt_quadrupole.madx @@ -0,0 +1,5 @@ +kqtf.a23b2 = kqtf.a23b2 -2.5e-04; +kqtf.a34b2 = kqtf.a34b2 +5.6e-05; +kqtd.a67b2 = kqtd.a67b2 +3.6e-05; +kqtf.a78b2 = kqtf.a78b2 +4.8e-05; + From 0eead2bb4c8cda61253b4536867b5e05646764ef Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Fri, 8 Mar 2024 15:07:55 +0100 Subject: [PATCH 05/26] version bump and flag as store_true --- CHANGELOG.md | 19 +++++++++++++++++++ omc3/__init__.py | 2 +- omc3/global_correction.py | 9 +++------ 3 files changed, 23 insertions(+), 7 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e31070f58..c97a74317 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,24 @@ # OMC3 Changelog + +#### IN PROGRESS - v0.14.0 - _jdilly_, _fscarlier_, _fesoubel_ + +- Added: + - Global Correction: Total phase correction arc-by-arc + - Global Correction: New MQM-knob categories `MQM_INJ_2024` and `MQM_TOP_2024` without Q4 and Q4-6 + - Script to copy KMod results into optics directory + + +#### 2024-03-08 - v0.13.1 - _jdilly_, _awegsche_, _mlegarre_, _fesoubel_ + +- Added: + - Knob Extractor: Lumiscan Knob + +- Fixed: + - BBS converter: fixed closed orbit units + - Optics: Pandas indexing error in DPP + + #### 2023-12-07 - v0.13.0 - _awegsche_ - Added: diff --git a/omc3/__init__.py b/omc3/__init__.py index 8c1a7a22a..a23a1835f 100644 --- a/omc3/__init__.py +++ b/omc3/__init__.py @@ -11,7 +11,7 @@ __title__ = "omc3" __description__ = "An accelerator physics tools package for the OMC team at CERN." __url__ = "https://github.com/pylhc/omc3" -__version__ = "0.13.1" +__version__ = "0.14.0" __author__ = "pylhc" __author_email__ = "pylhc@github.com" __license__ = "MIT" diff --git a/omc3/global_correction.py b/omc3/global_correction.py index d9be456a7..85b9b4a5a 100644 --- a/omc3/global_correction.py +++ b/omc3/global_correction.py @@ -174,7 +174,7 @@ NORM_DISPERSION, PHASE, TUNE) from omc3.model import manager from omc3.utils import logging_tools -from omc3.utils.iotools import PathOrStr, save_config +from omc3.utils.iotools import PathOrStr, OptionalStr, save_config LOG = logging_tools.get_logger(__name__) @@ -186,7 +186,6 @@ f"{F1001}R", f"{F1001}I", f"{F1010}R", f"{F1010}I") CORRECTION_DEFAULTS = { - "optics_file": None, "output_filename": "changeparameters_iter", "svd_cut": 0.01, "optics_params": OPTICS_PARAMS_CHOICES[:6], @@ -194,7 +193,6 @@ "beta_filename": "beta_phase_", "method": "pinv", "iterations": 4, - "arc_by_arc_phase": False, "include_ips_in_arc_by_arc": None, } @@ -275,9 +273,8 @@ def correction_params(): action="store_true", help="Update the (analytical) response per iteration.", ) params.add_parameter(name="arc_by_arc_phase", - type=bool, - default=CORRECTION_DEFAULTS["arc_by_arc_phase"], - help="Set to True for arc-by-arc total pahse correction.", ) + action="store_true", + help="Set to perform arc-by-arc total phase correction.", ) params.add_parameter(name="include_ips_in_arc_by_arc", type=str, choices=("left", "right"), From d908b34832e578168307e4d2ae599aa53259e558 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Fri, 8 Mar 2024 19:29:50 +0100 Subject: [PATCH 06/26] get bpms per plane --- omc3/correction/arc_by_arc.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/omc3/correction/arc_by_arc.py b/omc3/correction/arc_by_arc.py index be97a73bd..b9bdaffe4 100644 --- a/omc3/correction/arc_by_arc.py +++ b/omc3/correction/arc_by_arc.py @@ -16,8 +16,8 @@ def get_left_right_pair(arc, beam, bpms): return [left_of_arc, right_of_arc] -def get_arc_by_arc_bpm_pairs(meas_dict, opt): - bpms = meas_dict['PHASEX'].index +def get_arc_by_arc_bpm_pairs(meas_dict, opt, plane): + bpms = meas_dict[f'PHASE{plane}'].index beam = bpms[0][-1] bpm_pairs = {} bpm_pairs_with_ips = {} @@ -48,7 +48,7 @@ def get_arc_by_arc_bpm_pairs(meas_dict, opt): bpm_pairs_with_ips['78'] = [bpm_pairs['67'][0], bpm_pairs['78'][0]] bpm_pairs = bpm_pairs_with_ips - return bpm_pairs + return bpm_pairs def circular_sum_phase(phase_df, tune, bpm_pair, key): @@ -91,8 +91,8 @@ def get_arc_phases(bpm_pairs, meas_dict, tune, plane): def reduce_to_arc_extremities(meas_dict, nominal_model, opt): - bpm_pairs_x = get_arc_by_arc_bpm_pairs(meas_dict, opt) - bpm_pairs_y = get_arc_by_arc_bpm_pairs(meas_dict, opt) + bpm_pairs_x = get_arc_by_arc_bpm_pairs(meas_dict, opt, "X") + bpm_pairs_y = get_arc_by_arc_bpm_pairs(meas_dict, opt, "Y") meas_dict = get_arc_phases(bpm_pairs_x, meas_dict, nominal_model.headers['Q1'], 'X') meas_dict = get_arc_phases(bpm_pairs_y, meas_dict, nominal_model.headers['Q2'], 'Y') return meas_dict From 0b34c5fbad3c43f302b7110bf058465f47a5f6b4 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Fri, 8 Mar 2024 22:16:41 +0100 Subject: [PATCH 07/26] fixed check corrections --- CHANGELOG.md | 3 +++ omc3/plotting/plot_checked_corrections.py | 10 ++++++---- 2 files changed, 9 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c97a74317..96fe9b6b6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,9 @@ #### IN PROGRESS - v0.14.0 - _jdilly_, _fscarlier_, _fesoubel_ +- Fixed: + - Plot Check Corrections: Fixed Crash when normalized dispersion is in measurements + - Added: - Global Correction: Total phase correction arc-by-arc - Global Correction: New MQM-knob categories `MQM_INJ_2024` and `MQM_TOP_2024` without Q4 and Q4-6 diff --git a/omc3/plotting/plot_checked_corrections.py b/omc3/plotting/plot_checked_corrections.py index 231b8b483..266355d20 100644 --- a/omc3/plotting/plot_checked_corrections.py +++ b/omc3/plotting/plot_checked_corrections.py @@ -167,7 +167,7 @@ ) from omc3.definitions.optics import ( FILE_COLUMN_MAPPING, ColumnsAndLabels, RDT_COLUMN_MAPPING, RDT_PHASE_COLUMN, - RDT_IMAG_COLUMN, RDT_REAL_COLUMN, RDT_AMPLITUDE_COLUMN + RDT_IMAG_COLUMN, RDT_REAL_COLUMN, RDT_AMPLITUDE_COLUMN, NORM_DISP_NAME, ) from omc3.optics_measurements.constants import EXT from omc3.plotting.plot_optics_measurements import ( @@ -497,11 +497,13 @@ def show_plots(figure_dict: Dict[str, Figure]): # is x and the following column is y. They are added to the tab, which # is named by the optics parameter without plane. tab_name = " ".join(tab_prename.split("_")[:-1 if correction_name else -2]) # remove plane (and column-name) - name_y = next(parameter_names) + if tab_prename.startswith(NORM_DISP_NAME): + name_y = None # special case, so far the only one + else: + name_y = next(parameter_names) new_tab = PlotWidget( - figure_dict[name_x], - figure_dict[name_y], + *[figure_dict[name] for name in (name_x, name_y) if name is not None], title=tab_name, ) current_tab.add_tab(new_tab) From 2488022bdca8c7ae4d25e69f5ad6989ded8d0803 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Fri, 8 Mar 2024 23:04:19 +0100 Subject: [PATCH 08/26] lines in correction test style --- omc3/plotting/styles/correction_test.mplstyle | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/omc3/plotting/styles/correction_test.mplstyle b/omc3/plotting/styles/correction_test.mplstyle index 3ec0a5218..8f6a5d067 100644 --- a/omc3/plotting/styles/correction_test.mplstyle +++ b/omc3/plotting/styles/correction_test.mplstyle @@ -1 +1 @@ - lines.linestyle: None + lines.linestyle: - From e861a08cec8fcd759365a1133b4767752b8bc3d6 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Fri, 8 Mar 2024 23:06:40 +0100 Subject: [PATCH 09/26] plot test marker style --- omc3/plotting/styles/correction_test.mplstyle | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/omc3/plotting/styles/correction_test.mplstyle b/omc3/plotting/styles/correction_test.mplstyle index 8f6a5d067..4c41b2864 100644 --- a/omc3/plotting/styles/correction_test.mplstyle +++ b/omc3/plotting/styles/correction_test.mplstyle @@ -1 +1,2 @@ - lines.linestyle: - +lines.linestyle: - +lines.marker: . From 9406ea831455d189815fbd8ddc1c6a5e4c1197ae Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Sat, 9 Mar 2024 15:59:34 +0100 Subject: [PATCH 10/26] knob extractor hack --- CHANGELOG.md | 1 + omc3/knob_extractor.py | 6 ++++++ 2 files changed, 7 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 96fe9b6b6..8aa82dce9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,7 @@ - Fixed: - Plot Check Corrections: Fixed Crash when normalized dispersion is in measurements + - Knob extractor: fixing path hack. To be removed in the future when java is fixed on CCC machines - Added: - Global Correction: Total phase correction arc-by-arc diff --git a/omc3/knob_extractor.py b/omc3/knob_extractor.py index 0ae4c6694..356d24ad3 100644 --- a/omc3/knob_extractor.py +++ b/omc3/knob_extractor.py @@ -63,6 +63,12 @@ """ +####### WORKAROUND FOR JAVA ISSUES WITH LHCOP ################ +# This ia a hack, please remove at the earliers convenience +import os +if "PATH" in os.environ and "/mcr/bin" in os.environ["PATH"]: + os.environ["PATH"] = "/bin:" + os.environ["PATH"] +############################################################## import argparse import logging import math From f9776135fee669789a6130cd861f3d570fae02e2 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Wed, 13 Mar 2024 01:01:29 +0100 Subject: [PATCH 11/26] remove kq5.l2b1 from MQM_INJ_2024 --- .../lhc/2012/correctors/correctors_b1/beta_correctors.json | 1 - 1 file changed, 1 deletion(-) diff --git a/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json b/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json index c693b0687..2247da129 100644 --- a/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json +++ b/omc3/model/accelerators/lhc/2012/correctors/correctors_b1/beta_correctors.json @@ -121,7 +121,6 @@ "kq4.r6b1", "kq4.r8b1", "kq5.l1b1", - "kq5.l2b1", "kq5.l4b1", "kq5.l5b1", "kq5.l6b1", From a7cf7e9ec0d2696e8f6d375de4557790d1e22790 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Wed, 13 Mar 2024 01:04:32 +0100 Subject: [PATCH 12/26] removed kq4.r6b2 --- .../lhc/2012/correctors/correctors_b2/beta_correctors.json | 1 - 1 file changed, 1 deletion(-) diff --git a/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json b/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json index 42fbd9eec..8afbfcf5b 100644 --- a/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json +++ b/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json @@ -117,7 +117,6 @@ "kq4.l8b2", "kq4.r2b2", "kq4.r5b2", - "kq4.r6b2", "kq4.r8b2", "kq5.l1b2", "kq5.l2b2", From 8c762a1441d626cf836c5422204577a3ac202d9a Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Wed, 13 Mar 2024 01:06:09 +0100 Subject: [PATCH 13/26] removed kq4.r6b2 also from TOP --- .../lhc/2012/correctors/correctors_b2/beta_correctors.json | 1 - 1 file changed, 1 deletion(-) diff --git a/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json b/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json index 8afbfcf5b..02143af85 100644 --- a/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json +++ b/omc3/model/accelerators/lhc/2012/correctors/correctors_b2/beta_correctors.json @@ -194,7 +194,6 @@ "kq4.l2b2", "kq4.l8b2", "kq4.r2b2", - "kq4.r6b2", "kq4.r8b2", "kq5.l2b2", "kq5.l4b2", From 5e0257a5daa286e9efc885913b0bd8d43b34e906 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Wed, 13 Mar 2024 21:45:34 +0100 Subject: [PATCH 14/26] changed optics measurements style --- CHANGELOG.md | 1 + omc3/plotting/plot_optics_measurements.py | 3 ++- omc3/plotting/styles/optics_measurements.mplstyle | 6 ++++++ 3 files changed, 9 insertions(+), 1 deletion(-) create mode 100644 omc3/plotting/styles/optics_measurements.mplstyle diff --git a/CHANGELOG.md b/CHANGELOG.md index 8aa82dce9..607f1e725 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,7 @@ - Fixed: - Plot Check Corrections: Fixed Crash when normalized dispersion is in measurements + - Plot Optics Measurements: Added extra mpl style for clearer plots - Knob extractor: fixing path hack. To be removed in the future when java is fixed on CCC machines - Added: diff --git a/omc3/plotting/plot_optics_measurements.py b/omc3/plotting/plot_optics_measurements.py index 089e61b04..329e84f0c 100644 --- a/omc3/plotting/plot_optics_measurements.py +++ b/omc3/plotting/plot_optics_measurements.py @@ -124,7 +124,7 @@ Which plotting styles to use, either from plotting.styles.*.mplstyles or default mpl. - default: ``['standard']`` + default: ``['standard', 'optics_measurements']`` - **share_xaxis**: @@ -229,6 +229,7 @@ def get_params() -> EntryPointParameters: type=PathOrStr, ) params.update(get_plottfs_style_params()) + params["plot_styles"]["default"] = params["plot_styles"]["default"] + ["optics_measurements"] return params def get_optics_style_params() -> EntryPointParameters: diff --git a/omc3/plotting/styles/optics_measurements.mplstyle b/omc3/plotting/styles/optics_measurements.mplstyle new file mode 100644 index 000000000..e9feeae7d --- /dev/null +++ b/omc3/plotting/styles/optics_measurements.mplstyle @@ -0,0 +1,6 @@ +lines.marker: . # the default marker (Default: None) +lines.markersize: 3 # marker size, in points (Default: 6) +markers.fillstyle: none # {full, left, right, bottom, top, none} (Default: full) +font.size: 15.0 # (Default: 10.0) +axes.linewidth: 1.5 # edge line width (Default: 0.8) +axes.titlesize: large # font size of the axes title (Default: large) \ No newline at end of file From 0904fae1767921b95d6d97e9ecdb39dd09644819 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 18 Mar 2024 19:19:10 +0100 Subject: [PATCH 15/26] Print exciter BPM in error message --- CHANGELOG.md | 3 ++- omc3/__init__.py | 2 +- omc3/model/accelerators/lhc.py | 42 ++++++++++++++-------------------- 3 files changed, 20 insertions(+), 27 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 607f1e725..c8048d29f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,12 +1,13 @@ # OMC3 Changelog -#### IN PROGRESS - v0.14.0 - _jdilly_, _fscarlier_, _fesoubel_ +#### IN PROGRESS - v0.15.0 - _jdilly_, _fscarlier_, _fesoubel_ - Fixed: - Plot Check Corrections: Fixed Crash when normalized dispersion is in measurements - Plot Optics Measurements: Added extra mpl style for clearer plots - Knob extractor: fixing path hack. To be removed in the future when java is fixed on CCC machines + - LHC exciter BPM not found: Tells you which BPMs were searched for - Added: - Global Correction: Total phase correction arc-by-arc diff --git a/omc3/__init__.py b/omc3/__init__.py index a23a1835f..1e43a689d 100644 --- a/omc3/__init__.py +++ b/omc3/__init__.py @@ -11,7 +11,7 @@ __title__ = "omc3" __description__ = "An accelerator physics tools package for the OMC team at CERN." __url__ = "https://github.com/pylhc/omc3" -__version__ = "0.14.0" +__version__ = "0.15.0" __author__ = "pylhc" __author_email__ = "pylhc@github.com" __license__ = "MIT" diff --git a/omc3/model/accelerators/lhc.py b/omc3/model/accelerators/lhc.py index 96e850340..daa11395a 100644 --- a/omc3/model/accelerators/lhc.py +++ b/omc3/model/accelerators/lhc.py @@ -341,31 +341,23 @@ def get_exciter_bpm(self, plane: str, commonbpms: List[str]): l_r = "L" if ((beam == 1) != (plane == "Y")) else "R" a_b = "B" if beam == 1 else "A" if self.excitation == AccExcitationMode.ACD: - try: - return ( - _is_one_of_in( - [f"BPMY{a_b}.6L4.B{beam}", f"BPM.7L4.B{beam}"], commonbpms - ), - f"MKQA.6L4.B{beam}", - ) - except KeyError as e: - raise KeyError( - "AC-Dipole BPM not found in the common BPMs. Maybe cleaned?" - ) from e + excitation_name = "AC-Dipole" + possible_bpms = [f"BPMY{a_b}.6L4.B{beam}", f"BPM.7L4.B{beam}"] + element = f"MKQA.6L4.B{beam}" if self.excitation == AccExcitationMode.ADT: - try: - return ( - _is_one_of_in( - [f"BPMWA.B5{l_r}4.B{beam}", f"BPMWA.A5{l_r}4.B{beam}"], - commonbpms, - ), - f"ADTK{adt}5{l_r}4.B{beam}", - ) - except KeyError as e: - raise KeyError( - "ADT BPM not found in the common BPMs. Maybe cleaned?" - ) from e - return None + excitation_name = "ADT-AC-Dipole" + possible_bpms = [f"BPMWA.B5{l_r}4.B{beam}", f"BPMWA.A5{l_r}4.B{beam}"] + element = f"ADTK{adt}5{l_r}4.B{beam}" + else: + return None + + try: + return _first_one_in(possible_bpms, commonbpms), element + except KeyError as e: + raise KeyError( + f"{excitation_name} BPM (either {possible_bpms[0]} or {possible_bpms[1]}) " + "not found in the common BPMs. Maybe cleaned?" + ) from e def important_phase_advances(self) -> List[List[str]]: if "hl" in self.year.lower(): @@ -548,7 +540,7 @@ def _list_intersect_keep_order(primary_list: Iterable, secondary_list: Iterable) return [elem for elem in primary_list if elem in secondary_list] -def _is_one_of_in(bpms_to_find: Sequence[str], bpms: Sequence[str]): +def _first_one_in(bpms_to_find: Sequence[str], bpms: Sequence[str]): found_bpms = [bpm for bpm in bpms_to_find if bpm in bpms] if len(found_bpms): return list(bpms).index(found_bpms[0]), found_bpms[0] From aecbb3ca24e92626e23566cfb752828089bafb2a Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 18 Mar 2024 23:20:11 +0100 Subject: [PATCH 16/26] fix lhc --- omc3/model/accelerators/lhc.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/omc3/model/accelerators/lhc.py b/omc3/model/accelerators/lhc.py index daa11395a..fec5569ac 100644 --- a/omc3/model/accelerators/lhc.py +++ b/omc3/model/accelerators/lhc.py @@ -344,7 +344,7 @@ def get_exciter_bpm(self, plane: str, commonbpms: List[str]): excitation_name = "AC-Dipole" possible_bpms = [f"BPMY{a_b}.6L4.B{beam}", f"BPM.7L4.B{beam}"] element = f"MKQA.6L4.B{beam}" - if self.excitation == AccExcitationMode.ADT: + elif self.excitation == AccExcitationMode.ADT: excitation_name = "ADT-AC-Dipole" possible_bpms = [f"BPMWA.B5{l_r}4.B{beam}", f"BPMWA.A5{l_r}4.B{beam}"] element = f"ADTK{adt}5{l_r}4.B{beam}" From 23e41b37d0b10d4efb9e592602bf9bbbc20e4213 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 6 May 2024 18:11:59 +0200 Subject: [PATCH 17/26] added NaN check --- omc3/harpy/clean.py | 24 +++++++++++++++++++++--- 1 file changed, 21 insertions(+), 3 deletions(-) diff --git a/omc3/harpy/clean.py b/omc3/harpy/clean.py index c01043535..bafb9d778 100644 --- a/omc3/harpy/clean.py +++ b/omc3/harpy/clean.py @@ -54,7 +54,8 @@ def _cut_cleaning(harpy_input, bpm_data, model): bpm_flatness = _detect_flat_bpms(bpm_data, harpy_input.peak_to_peak) bpm_spikes = _detect_bpms_with_spikes(bpm_data, harpy_input.max_peak) exact_zeros = _detect_bpms_with_exact_zeros(bpm_data, harpy_input.keep_exact_zeros) - all_bad_bpms = _index_union(known_bad_bpms, bpm_flatness, bpm_spikes, exact_zeros) + bpm_nans = _detect_bpms_with_nans(bpm_data) + all_bad_bpms = _index_union(known_bad_bpms, bpm_flatness, bpm_spikes, exact_zeros, bpm_nans) original_bpms = bpm_data.index bpm_data = bpm_data.loc[bpm_data.index.difference(all_bad_bpms, sort=False)] @@ -110,10 +111,24 @@ def _detect_bpms_with_spikes(bpm_data, max_peak_cut): too_low = bpm_data[bpm_data.min(axis=1) < -max_peak_cut].index bpm_spikes = too_high.union(too_low) if bpm_spikes.size: - LOGGER.debug(f"Spikes > {max_peak_cut} detected. BPMs removed: {bpm_spikes.size}") + LOGGER.debug( + f"Spikes > {max_peak_cut} detected. " + f"{bpm_spikes.size} BPMs removed: {', '.join(bpm_spikes)}" + ) return bpm_spikes +def _detect_bpms_with_nans(bpm_data) -> pd.Index: + """Detects BPMs with NaN values.""" + nan_bpms = bpm_data[bpm_data.isna().any(axis=1)].index + if nan_bpms.size: + LOGGER.debug( + f"NaN BPMs detected. " + f"{nan_bpms.size} BPMs removed: {', '.join(nan_bpms)}" + ) + return nan_bpms + + def _detect_bpms_with_exact_zeros(bpm_data, keep_exact_zeros): """Detects BPMs with exact zeros due to OP workaround.""" if keep_exact_zeros: @@ -121,7 +136,10 @@ def _detect_bpms_with_exact_zeros(bpm_data, keep_exact_zeros): return pd.Index([]) exact_zeros = bpm_data[~np.all(bpm_data, axis=1)].index if exact_zeros.size: - LOGGER.debug(f"Exact zeros detected. BPMs removed: {exact_zeros.size}") + LOGGER.debug( + f"Exact zeros detected. " + f"{exact_zeros.size} BPMs removed: {', '.join(exact_zeros)} " + ) return exact_zeros From 3020b80510b8b6cbee528bcb7202f4486c2b7d17 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 6 May 2024 18:17:30 +0200 Subject: [PATCH 18/26] made warning --- omc3/harpy/clean.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/omc3/harpy/clean.py b/omc3/harpy/clean.py index bafb9d778..828c219fc 100644 --- a/omc3/harpy/clean.py +++ b/omc3/harpy/clean.py @@ -122,7 +122,7 @@ def _detect_bpms_with_nans(bpm_data) -> pd.Index: """Detects BPMs with NaN values.""" nan_bpms = bpm_data[bpm_data.isna().any(axis=1)].index if nan_bpms.size: - LOGGER.debug( + LOGGER.warning( f"NaN BPMs detected. " f"{nan_bpms.size} BPMs removed: {', '.join(nan_bpms)}" ) From 5cfe24c14d4c39fce37ef153057cb1dcae08acb4 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 6 May 2024 18:33:32 +0200 Subject: [PATCH 19/26] added generic accelerator --- omc3/model/accelerators/generic.py | 17 +++++++++++++++++ omc3/model/manager.py | 5 +++-- 2 files changed, 20 insertions(+), 2 deletions(-) create mode 100644 omc3/model/accelerators/generic.py diff --git a/omc3/model/accelerators/generic.py b/omc3/model/accelerators/generic.py new file mode 100644 index 000000000..ea3f25b8c --- /dev/null +++ b/omc3/model/accelerators/generic.py @@ -0,0 +1,17 @@ + +from generic_parser import EntryPoint + +from omc3.model.accelerators.accelerator import AccElementTypes, Accelerator + + +class Generic(Accelerator): + NAME = "generic" + RE_DICT = {AccElementTypes.BPMS: r"B", + AccElementTypes.MAGNETS: r".*", + AccElementTypes.ARC_BPMS: r"B", + } + + def __init__(self, *args, **kwargs): + parser = EntryPoint(self.get_parameters(), strict=True) + opt = parser.parse(*args, **kwargs) + super().__init__(opt) diff --git a/omc3/model/manager.py b/omc3/model/manager.py index 2c9dc8c2c..90f622637 100644 --- a/omc3/model/manager.py +++ b/omc3/model/manager.py @@ -6,7 +6,7 @@ It contains entrypoint wrappers to get accelerator classes or their instances. """ from generic_parser.entrypoint_parser import entrypoint, EntryPoint, EntryPointParameters -from omc3.model.accelerators import lhc, ps, esrf, psbooster, skekb, petra, iota +from omc3.model.accelerators import lhc, ps, esrf, psbooster, skekb, petra, iota, generic from generic_parser.dict_parser import ArgumentError from generic_parser.tools import silence @@ -21,7 +21,8 @@ skekb.SKekB.NAME: skekb.SKekB, "JPARC": skekb.SKekB, petra.Petra.NAME: petra.Petra, - iota.Iota.NAME: iota.Iota + iota.Iota.NAME: iota.Iota, + generic.Generic.NAME: generic.Generic, } From 099c42dda9bea380f4daad34b06a6c210072821d Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 6 May 2024 18:55:57 +0200 Subject: [PATCH 20/26] skip coupling for generic and sps --- omc3/optics_measurements/measure_optics.py | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/omc3/optics_measurements/measure_optics.py b/omc3/optics_measurements/measure_optics.py index 87c7116de..390c8d638 100644 --- a/omc3/optics_measurements/measure_optics.py +++ b/omc3/optics_measurements/measure_optics.py @@ -64,7 +64,15 @@ def measure_optics(input_files: InputFiles, measure_input): dispersion.calculate_dispersion(measure_input, input_files, common_header, plane) if plane == "X": dispersion.calculate_normalised_dispersion(measure_input, input_files, beta_df, common_header) - coupling.calculate_coupling(measure_input, input_files, phase_dict, tune_dict, common_header) + + try: + coupling.calculate_coupling(measure_input, input_files, phase_dict, tune_dict, common_header) + except ZeroDivisionError: + if measure_input.accelerator.NAME in ('generic', 'sps'): + LOGGER.error("Coupling failed with zero-division error. Single plane BPMs? Skipped.") + else: + raise + if measure_input.only_coupling: return if 'rdt' in measure_input.nonlinear: From 51c2400dacc4d12be722618007e26090e17a8146 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Wed, 5 Jun 2024 16:58:24 +0200 Subject: [PATCH 21/26] fixed changelog bugs --- CHANGELOG.md | 93 +++++++++++++++++++++++++++------------------------- 1 file changed, 49 insertions(+), 44 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e80d22228..a94373da8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -18,7 +18,8 @@ - Fixed: - LHC Knobs: Fixed typo "MQSOR" to "MQSORG" in LHC Beam 2 coupling knobs. -- CI: Dropped python 3.8 +- CI: + - Dropped python 3.8 #### 2024-03-18 - v0.14.0 - _jdilly_ @@ -37,26 +38,27 @@ #### 2023-12-07 - v0.13.0 - _awegsche_ - Added: - - complete overhaul of model creation, uses now `acc-models` for LHC, PS and PSB and prints - useful information about available model parameters. Can load from either a user defined path - (`--path `) or from the afs copy of acc-models (`--afs`) + - complete overhaul of model creation, uses now `acc-models` for LHC, PS and PSB and prints + useful information about available model parameters. Can load from either a user defined path + (`--path `) or from the afs copy of acc-models (`--afs`) #### 2023-11-29 - v0.12.1 - _jdilly_ - Fixed: - - `tbt_converter` now also passes given output format to writer when running without noise. + - `tbt_converter` now also passes given output format to writer when running without noise. #### 2023-11-29 - v0.12.0 - _jdilly_ - Added to harmonic analysis: - - `suffix` input parameter: adds suffix to output files, which e.g. allows running the same file + - `suffix` input parameter: adds suffix to output files, which e.g. allows running the same file with different parameters without overwriting it. - - `bunch_ids` input parameter: in case of multibunch-files only analyse these bunches. + - `bunch_ids` input parameter: in case of multibunch-files only analyse these bunches. If not given, all bunches will be analysed, as before. #### 2023-09-20 - v0.11.4 - _fscarlier_, _awegsche_ + - Fixed: - - bug in beta from phase (3BPM method) that calculated too high errors for first and last BPMs + - bug in beta from phase (3BPM method) that calculated too high errors for first and last BPMs #### 2023-09-20 - v0.11.3 - _jdilly_, _awegsche_ @@ -71,25 +73,25 @@ - Plot Optics: making normalized dispersion plot a special case. - Added: - - Plot Optics: optional input "--labels" to manually set the legend-labels. + - Plot Optics: optional input "--labels" to manually set the legend-labels. #### 2023-06-16 - v0.11.1 - _jdilly_ - Fixed: - - OptionalString: 'None' as input is converted to None. - - Missing Kerberos config added to MANIFEST for packaging. - - Plot Optics plots now correct error-column, e.g. for beta-beating. - - Added warnings/errors for too few bpms in N-BPM/3-BPM methods. - - Added navbar to sphinx documentation. + - OptionalString: 'None' as input is converted to None. + - Missing Kerberos config added to MANIFEST for packaging. + - Plot Optics plots now correct error-column, e.g. for beta-beating. + - Added warnings/errors for too few bpms in N-BPM/3-BPM methods. + - Added navbar to sphinx documentation. - Tests: - - Added test for the classes in omc3.plotting.utils.windows + - Added test for the classes in omc3.plotting.utils.windows #### 2023-06-05 - v0.11.0 - _jdilly_ - Added: - - `omc3.plotting.utils.windows`: Qt-based windows and widgets for matplotlib-figure organization. - - Using the new windows in `omc3.plotting.plot_checked_corrections` and `omc3.plotting.plot_tfs` + - `omc3.plotting.utils.windows`: Qt-based windows and widgets for matplotlib-figure organization. + - Using the new windows in `omc3.plotting.plot_checked_corrections` and `omc3.plotting.plot_tfs` #### 2023-05-15 - v0.10.0 - _jdilly_ @@ -112,13 +114,13 @@ #### 2023-04-20 - v0.8.0 - _jdilly_ -- Fix: +- Fixed: - Changed all `pandas`/`tfs-pandas` `append()` and `join()` to `concat()` - Moved `InputFiles` into separate module #### 2023-03-16 - v0.7.2 - _jdilly_ -- Fix: +- Fixed: - Added missing columns to coupling in BBS-OMC3 converter #### 2023-01-20 - v0.7.1 - _jdilly_ @@ -126,7 +128,7 @@ - Added: - Amplitude Detuning plots: Switch to plot only with/without BBQ correction -- Fix: +- Fixed: - Second Order Amplitude Detuning fit now working - Correct print/calculation of second order direct terms for forced kicks in plot-labels. @@ -153,19 +155,22 @@ #### 2022-10-12 - v0.6.4 -- Fixed the phase filtering for coupling calculation to not forget columns. +- Fixed: + - phase filtering for coupling calculation will not forget columns #### 2022-09-27 - v0.6.3 -- Pandafied `knob_extractor` internally and python output. +- Added: + - pandafied `knob_extractor` internally and python output #### 2022-09-22 - v0.6.2 -- Cleaned logging in `knob_extractor` +- Added: + - cleaned logging in `knob_extractor` #### 2022-09-21 - v0.6.1 -- Added: +- Added: - tbt output datatype for converter. #### 2022-09-20 - v0.6.0 @@ -184,7 +189,8 @@ #### 2022-09-12 - v0.5.1 -- Updated to turn_by_turn v0.4.0: Includes SPS reader +- Added: + - updated to turn_by_turn v0.4.0: Includes SPS reader #### 2022-07-25 - v0.5.0 - _Mael-Le-Garrec_ @@ -201,7 +207,7 @@ #### 2022-05-30 - v0.4.0 - _jdilly_ -- Added: +- Added: - 2D amplitude detuning analysis and 3D plotting of the results - Converter for amp.det. analysis from bbs to omc3 - general typehinting/doc/unification of entrypoint parameters/saving @@ -266,12 +272,11 @@ - introducing pathlib.Path in some places - output-paths in model job-files are relative -- Fixes: +- Fixed: - Matplotlib warnings for `set_window_title` - excluded Windows and MacOS py3.9 from normal testing, due to installation issues of pyTables - model creation accepts relative and absolute paths - #### 2020-09-30 - Added: @@ -288,31 +293,31 @@ #### 2020-03-04 - Added: - - lin-file natural tune updater + - lin-file natural tune updater #### 2020-02-24 - Added: - - amplitude detuning analysis - - amplitude detuning and bbq plotting - - time tools - - plotting helpers + - amplitude detuning analysis + - amplitude detuning and bbq plotting + - time tools + - plotting helpers - Distinction between `BasicTests` and `Extended Tests` #### Before 2020-02 - Updated and moved main functionalities from python 2.7 - - Madx wrapper - - Frequency Analysis of turn by turn - - Optics measurement analysis scripts - - Accelerator class and Model Creator - - K-mod - - Spectrum Plotting - - Turn-by-Turn Converter + - Madx wrapper + - Frequency Analysis of turn by turn + - Optics measurement analysis scripts + - Accelerator class and Model Creator + - K-mod + - Spectrum Plotting + - Turn-by-Turn Converter - `setup.py` and packaging functionality - Automated CI - - Multiple versions of python - - Accuracy tests - - Unit tests - - Release automation + - Multiple versions of python + - Accuracy tests + - Unit tests + - Release automation From 5ac386f0622a90058a643c4954f677b689e0ff27 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 28 Oct 2024 16:25:29 +0100 Subject: [PATCH 22/26] nan in output --- omc3/harpy/clean.py | 48 +++++++++++++++++++++++++++++++++++---------- 1 file changed, 38 insertions(+), 10 deletions(-) diff --git a/omc3/harpy/clean.py b/omc3/harpy/clean.py index 828c219fc..3ca82b6a6 100644 --- a/omc3/harpy/clean.py +++ b/omc3/harpy/clean.py @@ -60,9 +60,14 @@ def _cut_cleaning(harpy_input, bpm_data, model): bpm_data = bpm_data.loc[bpm_data.index.difference(all_bad_bpms, sort=False)] bad_bpms_with_reasons = _get_bad_bpms_summary( - harpy_input, known_bad_bpms, bpm_flatness, bpm_spikes, exact_zeros + harpy_input, + known=known_bad_bpms, + flat=bpm_flatness, + spike=bpm_spikes, + zero=exact_zeros, + nan=bpm_nans, ) - _report_clean_stats(original_bpms.size, bpm_data.index.size) + _report_clean_stats(original_bpms.size, bpm_data.index.size, bad_bpms_with_reasons) bpm_data = _fix_polarity(harpy_input.wrong_polarity_bpms, bpm_data) if model is not None and harpy_input.first_bpm is not None: bpm_data = _resync_bpms(harpy_input, bpm_data, model) @@ -143,27 +148,50 @@ def _detect_bpms_with_exact_zeros(bpm_data, keep_exact_zeros): return exact_zeros -def _get_bad_bpms_summary(harpy_input, known_bad_bpms, bpm_flatness, bpm_spikes, exact_zeros): - return ([f"{bpm_name} Known bad BPM" for bpm_name in known_bad_bpms] + - [f"{bpm_name} Flat BPM, the difference between min/max is smaller than " - f"{harpy_input.peak_to_peak}" for bpm_name in bpm_flatness] + - [f"{bpm_name} Spiky BPM, found spike higher than " - f"{harpy_input.max_peak}" for bpm_name in bpm_spikes] + - [f"{bpm_name} Found an exact zero" for bpm_name in exact_zeros]) +def _get_bad_bpms_summary(harpy_input, **kwargs): + human_readable = { + "known": "Known bad BPM", + "flat": f"Flat BPM, the difference between min/max is smaller than {harpy_input.peak_to_peak}", + "spike": f"Spiky BPM, found spike higher than {harpy_input.max_peak}", + "zero": "Found an exact zero", + "nan": "Found NaN", + } + # Quick check that catches coding errors/typos: + unknown_kwargs = [kwarg for kwarg in kwargs if kwarg not in human_readable.keys()] + if len(unknown_kwargs): + raise NameError(f"Unknown reason(s) for Bad-BPMs: {unknown_kwargs}") -def _report_clean_stats(n_total_bpms, n_good_bpms): + return [ + f"{bpm_name} {msg}" for reason, msg in human_readable.items() for bpm_name in kwargs[reason] + ] + + +def _report_clean_stats(n_total_bpms, n_good_bpms, bad_bpms_with_reasons): LOGGER.debug("Filtering done:") + + bad_bpms_message = ( + "Bad BPMs found:\n" + "\n".join(bad_bpms_with_reasons) + ) # as this is not written out yet, this will provide more info in case of raising errors. + + # If all BPMs have been bad --- if n_total_bpms == 0: + LOGGER.info(bad_bpms_message) raise ValueError("Total Number of BPMs after filtering is zero.") + + # The good, the bad and the ugly BPMs --- n_bad_bpms = n_total_bpms - n_good_bpms LOGGER.debug(f"(Statistics for file reading) Total BPMs: {n_total_bpms}, " f"Good BPMs: {n_good_bpms} ({(100 * n_good_bpms / n_total_bpms):2.2f}%), " f"Bad BPMs: {n_bad_bpms} ({(100 * n_bad_bpms / n_total_bpms):2.2f}%)") if (n_good_bpms / n_total_bpms) < 0.5: + LOGGER.info(bad_bpms_message) raise ValueError("More than half of BPMs are bad. " "This could be because a bunch not present in the machine has been " "selected or because of a problem with the phasing of the BPMs.") + + LOGGER.debug(bad_bpms_message) def _index_union(*indices): From ee71a70c72c3df665a89fac8d4dbed7b6ad1dafa Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 28 Oct 2024 17:38:19 +0100 Subject: [PATCH 23/26] CHANGELOG --- CHANGELOG.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index fb4d574c4..6093f4934 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,15 +3,15 @@ #### IN PROGRESS - v0.18.0 - _jdilly_, _fscarlier_, _fesoubel_ - Fixed: - - Plot Check Corrections: Fixed Crash when normalized dispersion is in measurements - Plot Optics Measurements: Added extra mpl style for clearer plots - - Knob extractor: fixing path hack. To be removed in the future when java is fixed on CCC machines - LHC exciter BPM not found: Tells you which BPMs were searched for - Added: - Global Correction: Total phase correction arc-by-arc - Global Correction: New MQM-knob categories `MQM_INJ_2024` and `MQM_TOP_2024` without Q4 and Q4-6 - Script to copy KMod results into optics directory + - Cleaning: Filter BPMs with NaNs + - Cleaning: Log bad BPMs with reasons before raising errors. #### 2024-09-30 - v0.16.2 - _jdilly_ From 4d18da95984fde4f21f2f25e9e9dd9ec7bea9cd5 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 28 Oct 2024 19:34:12 +0100 Subject: [PATCH 24/26] bad bpm message --- omc3/harpy/clean.py | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/omc3/harpy/clean.py b/omc3/harpy/clean.py index 3ca82b6a6..efa878516 100644 --- a/omc3/harpy/clean.py +++ b/omc3/harpy/clean.py @@ -170,10 +170,9 @@ def _get_bad_bpms_summary(harpy_input, **kwargs): def _report_clean_stats(n_total_bpms, n_good_bpms, bad_bpms_with_reasons): LOGGER.debug("Filtering done:") - bad_bpms_message = ( - "Bad BPMs found:\n" - "\n".join(bad_bpms_with_reasons) - ) # as this is not written out yet, this will provide more info in case of raising errors. + # As it not written out yet, provide more info in case of raising errors: + bad_bpms_message = "Bad BPMs found:\n" + bad_bpms_message += "\n".join(bad_bpms_with_reasons) # If all BPMs have been bad --- if n_total_bpms == 0: From c97a9ff0e65f9ad8ef62fc946054f7f4467918a4 Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 28 Oct 2024 19:49:06 +0100 Subject: [PATCH 25/26] fix no data in plane --- omc3/plotting/spectrum/utils.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/omc3/plotting/spectrum/utils.py b/omc3/plotting/spectrum/utils.py index 4ed70a373..b475dd303 100644 --- a/omc3/plotting/spectrum/utils.py +++ b/omc3/plotting/spectrum/utils.py @@ -55,6 +55,10 @@ def __init__(self, path: str) -> None: def add_data(self, label: str, new_data: dict) -> None: self.data[label] = new_data for plane in PLANES: + if new_data[plane] is None: + LOG.warning(f'No data in plane {plane.upper()} found for {label}.') + continue + # Add tunes try: self.tunes[plane].append(new_data[plane][LIN].loc[f'TUNE{plane.upper()}']) From bba82c7820906299354f3030016f3a3fc6567a8f Mon Sep 17 00:00:00 2001 From: JoschD <26184899+JoschD@users.noreply.github.com> Date: Mon, 28 Oct 2024 19:49:55 +0100 Subject: [PATCH 26/26] changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 6093f4934..3a56db3a5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,7 @@ - Fixed: - Plot Optics Measurements: Added extra mpl style for clearer plots - LHC exciter BPM not found: Tells you which BPMs were searched for + - Plot Spectrum: Correct error handling for Single-Plane BPMs - Added: - Global Correction: Total phase correction arc-by-arc