DESCRIPTION

Package: gwasvcf
Title: Tools for dealing with GWAS summary data in VCF format
Version: 0.1.0
Authors@R: 
    person(given = "Gibran",
           family = "Hemani",
           role = c("aut", "cre"),
           email = "g.hemani@bristol.ac.uk",
           comment = c(ORCID = "0000-0003-0920-1055"))
Description: Tools for dealing with GWAS summary data in VCF format. Includes reading, querying, writing, as well as helper functions such as LD proxy searches.
URL: https://github.com/mrcieu/gwasvcf
BugReports: https://github.com/mrcieu/gwasvcf/issues
Depends: 
  R (>= 3.6.0),
  VariantAnnotation
Imports:
  BiocGenerics,
  Biostrings,
  S4Vectors,
  IRanges,
  GenomicRanges,
  SummarizedExperiment,
  GenomeInfoDb,
  Rhtslib,
  Rsamtools,
  tidyr,
  stringr,
  magrittr,
  dplyr,
  data.table,
  methods,
  utils,
  jsonlite,
  coloc,
  genetics.binaRies,
  testthat,
  RSQLite,
  rlang
Remotes:
  github::explodecomputer/genetics.binaRies,
  bioc::3.12/snpStats,
  bioc::3.12/BiocGenerics,
  bioc::3.12/Biostrings,
  bioc::3.12/S4Vectors,
  bioc::3.12/IRanges,
  bioc::3.12/GenomicRanges,
  bioc::3.12/GenomeInfoDb,
  bioc::3.12/SummarizedExperiment,
  bioc::3.12/Rhtslib,
  bioc::3.12/Rsamtools,
  bioc::3.12/VariantAnnotation
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.1
Suggests: 
    knitr,
    rmarkdown,
    markdown
VignetteBuilder: knitr