Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Galaxy error log show warnings #1

Open
michaelvanvliet opened this issue Jul 4, 2018 · 0 comments
Open

Galaxy error log show warnings #1

michaelvanvliet opened this issue Jul 4, 2018 · 0 comments
Labels
invalid This doesn't seem right

Comments

@michaelvanvliet
Copy link
Member

When starting the Galaxy container on minikube I see several warning related to tamenmr.

Using release branch: https://github.com/phnmnl/container-galaxy-k8s-runtime/tree/release/v18.01-dalcotidine

galaxy.tools WARNING 2018-07-04 15:21:18,359 Tool tamenmr-normalise_data: a when tag has not been defined for 'method_choice (method) --> totInt', assuming empty inputs.
galaxy.tools WARNING 2018-07-04 15:21:18,359 Tool tamenmr-normalise_data: a when tag has not been defined for 'method_choice (method) --> PQN', assuming empty inputs.
galaxy.tools WARNING 2018-07-04 15:21:18,363 Tool tamenmr-normalise: a when tag has not been defined for 'method_choice (method) --> totInt', assuming empty inputs.
galaxy.tools WARNING 2018-07-04 15:21:18,363 Tool tamenmr-normalise: a when tag has not been defined for 'method_choice (method) --> PQN', assuming empty inputs.
galaxy.tools WARNING 2018-07-04 15:21:18,365 Tool tamenmr-pca: a when tag has not been defined for 'group_choice (group) --> N', assuming empty inputs.
galaxy.tools WARNING 2018-07-04 15:21:18,372 Tool tamenmr-plotnmr: a when tag has not been defined for 'groups_choice (factCond) --> N', assuming empty inputs.
galaxy.tools WARNING 2018-07-04 15:21:18,372 Tool tamenmr-plotnmr: a when tag has not been defined for 'aggr_choice (aggr) --> N', assuming empty inputs.
galaxy.tools WARNING 2018-07-04 15:21:18,372 Tool tamenmr-plotnmr: a when tag has not been defined for 'plotBins_choice (plotBins) --> N', assuming empty inputs.
galaxy.tools WARNING 2018-07-04 15:21:18,395 Tool tamenmr-ttest: a when tag has not been defined for 'paired_choice (paired) --> N', assuming empty inputs.

@michaelvanvliet michaelvanvliet added the invalid This doesn't seem right label Jul 4, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
invalid This doesn't seem right
Projects
None yet
Development

No branches or pull requests

1 participant