From f0c962b9f2e14d863c106dae14c06d5ca0d9ad2c Mon Sep 17 00:00:00 2001 From: "Laura Luebbert, Ph.D." <56094636+lauraluebbert@users.noreply.github.com> Date: Tue, 29 Oct 2024 16:27:59 -0400 Subject: [PATCH] Update dependents.md --- docs/src/en/dependents.md | 32 ++++++++++++++++---------------- 1 file changed, 16 insertions(+), 16 deletions(-) diff --git a/docs/src/en/dependents.md b/docs/src/en/dependents.md index 52604c40..afe8d116 100644 --- a/docs/src/en/dependents.md +++ b/docs/src/en/dependents.md @@ -11,25 +11,25 @@ Harvard's Artificial Intelligence for Medicine and Science lab. A LLM powered chatbot for bioinformatics ([documentation](https://brad-bioinformatics-retrieval-augmented-data.readthedocs.io/en/latest/index.html), [project main page](https://brad-bioinformatics-retrieval-augmented-data.readthedocs.io/_/downloads/en/latest/pdf/)). - [scPRINT](https://www.jkobject.com/scPRINT/) scPRINT is a large transformer model built for the inference of gene networks (connections between genes explaining the cell's expression profile) from scRNAseq data ([preprint](https://www.biorxiv.org/content/10.1101/2024.07.29.605556v1)). -- [AnoPrimer](https://sanjaynagi.github.io/AnoPrimer/landing-page.html): +- [AnoPrimer](https://sanjaynagi.github.io/AnoPrimer/landing-page.html) AnoPrimer is a python package for primer design in An. gambiae and An. funestus, whilst considering genetic variation in wild whole-genome sequenced specimens in malariagen_data. - [AvaTaR](https://github.com/zou-group/avatar) Optimizing LLM Agents for Tool-Assisted Knowledge Retrieval (NeurIPS 2024) by James Zou Lab at Stanford University. - [GRLDrugProp](https://github.com/Madscba/GRLDrugProp) Graph representation learning for modelling drug properties. -- Rust implementation of gget: https://github.com/noamteyssier/ggetrs -- https://github.com/Superbio-ai/getbio -- https://github.com/yonniejon/AchillesPrediction -- https://github.com/ELELAB/cancermuts -- https://github.com/Benoitdw/SNPrimer -- https://github.com/louisjoecodes/a16z-hackathon-project -- https://github.com/EvX57/BACE1-Drug-Discovery -- https://github.com/vecerkovakaterina/hidden-genes-msc -- https://github.com/vecerkovakaterina/llm_bioinfo_agent -- https://github.com/greedjar74/upstage_AI_Lab -- https://github.com/alphavector/all +- Rust implementation of gget: [https://github.com/noamteyssier/ggetrs](https://github.com/noamteyssier/ggetrs) +- [https://github.com/Superbio-ai/getbio](https://github.com/Superbio-ai/getbio) +- [https://github.com/yonniejon/AchillesPrediction](https://github.com/yonniejon/AchillesPrediction) +- [https://github.com/ELELAB/cancermuts](https://github.com/ELELAB/cancermuts) +- [https://github.com/Benoitdw/SNPrimer](https://github.com/Benoitdw/SNPrimer) +- [https://github.com/louisjoecodes/a16z-hackathon-project](https://github.com/louisjoecodes/a16z-hackathon-project) +- [https://github.com/EvX57/BACE1-Drug-Discovery](https://github.com/EvX57/BACE1-Drug-Discovery) +- [https://github.com/vecerkovakaterina/hidden-genes-msc](https://github.com/vecerkovakaterina/hidden-genes-msc) +- [https://github.com/vecerkovakaterina/llm_bioinfo_agent](https://github.com/vecerkovakaterina/llm_bioinfo_agent) +- [https://github.com/greedjar74/upstage_AI_Lab](https://github.com/greedjar74/upstage_AI_Lab) +- [https://github.com/alphavector/all](https://github.com/alphavector/all) -Also see: https://github.com/pachterlab/gget/network/dependents +Also see: [https://github.com/pachterlab/gget/network/dependents](https://github.com/pachterlab/gget/network/dependents) # 📃 Featured publications - David Bradley et al., [The fitness cost of spurious phosphorylation.](https://doi.org/10.1038/s44318-024-00200-7) *The EMBO Journal* (2024). DOI: 10.1038/s44318-024-00200-7 @@ -49,6 +49,6 @@ Also see: https://github.com/pachterlab/gget/network/dependents - Mingze Dong et al., [Deep identifiable modeling of single-cell atlases enables zero-shot query of cellular states.](https://doi.org/10.1101/2023.11.11.566161) *bioRxiv* (2023). DOI: 10.1101/2023.11.11.566161 # 📰 News -- Documentary short film about *gget*: https://youtu.be/cVR0k6Mt97o -- Podcast episode for the Prototype Fund Public Interest Podcast about the importance of open-source software and its role in academic research (in German): https://public-interest-podcast.podigee.io/33-pips4e4 -- Prototype Fund announcement: https://prototypefund.de/project/gget-genomische-datenbanken/ +- Documentary short film about *gget*: [https://youtu.be/cVR0k6Mt97o](https://youtu.be/cVR0k6Mt97o) +- Podcast episode for the Prototype Fund Public Interest Podcast about the importance of open-source software and its role in academic research (in German): [https://public-interest-podcast.podigee.io/33-pips4e4](https://public-interest-podcast.podigee.io/33-pips4e4) +- Prototype Fund announcement: [https://prototypefund.de/project/gget-genomische-datenbanken](https://prototypefund.de/project/gget-genomische-datenbanken/)