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    33 repositories

    • Open-Hotgenes

      Public
      R
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • pharma-hands-on-exercises

      Public
      Rmd training files for getting started with R. Introduces R concepts for data manipulation, visualization and other topics using PhUSE synthetic data.
      R
      •
      Creative Commons Attribution Share Alike 4.0 International
      •4•13•0•0•Updated Nov 12, 2024Nov 12, 2024

    • scikit-digital-health

      Public
      Python package for the processing and analysis of Inertial Measurement Unit Data
      sensorswearablesactigraphyimu-sensorpython
      Python
      •
      MIT License
      •22•62•3•3•Updated Nov 8, 2024Nov 8, 2024

    • graphs-renderer

      Public
      A javascript library that provides rendering capabilities for CFD, scatterplot and Histogram graphs. It uses d3js for graph rendering.
      JavaScript
      •
      Apache License 2.0
      •1•2•0•6•Updated Oct 31, 2024Oct 31, 2024

    • LISTT

      Public
      Lyme In Silico Typing Tool for Borrelia burgdorferi s.l.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • integrated-qsp-vpop-onco-efficacy-CPT-PSP

      Public
      Code for the manuscript "An integrated quantitative systems pharmacology virtual population approach for calibration with oncology efficacy endpoints."
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • e3moldiffusion

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 20, 2024Oct 20, 2024

    • Dataset-JSON-1.1-Interface

      Public
      CSS
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • bigwig-loader

      Public
      A fast dataloader for bigwig files made for machine learning
      Python
      •
      Apache License 2.0
      •1•24•0•0•Updated Sep 30, 2024Sep 30, 2024

    • carver

      Public
      Clinical Analysis Reporting and Visualization Ensemble (in R)
      R
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • zippeR

      Public
      Tools for Working with ZIP Codes, ZCTAs, and 3-digit ZCTAs (R package)
      R
      •
      Apache License 2.0
      •0•10•0•0•Updated Jul 16, 2024Jul 16, 2024

    • deprivateR

      Public
      Tools for calculating and visualizing measures of deprivation for social determinants of health research in the United States (R package)
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • TRR-ACoP2022-Public

      Public
      Public release version of ACoP2022
      Julia
      •
      Apache License 2.0
      •2•2•0•1•Updated May 10, 2024May 10, 2024

    • shiny-framework

      Public
      Shiny Framework for reproducible content - Create table in Shiny, then run a production step (on HPC GRID) and compare table objects for 100% match
      R
      •
      Apache License 2.0
      •4•9•0•0•Updated May 9, 2024May 9, 2024

    • CoSpred

      Public
      Mass Spectrometry Spectrum Prediction Workflow
      Python
      •
      Apache License 2.0
      •0•6•0•0•Updated Apr 19, 2024Apr 19, 2024

    • pfaster

      Public
      pneumococcal FASTA serotype calling
      Python
      •
      Apache License 2.0
      •2•3•0•1•Updated Mar 22, 2024Mar 22, 2024

    • remaster-the-tidyverse-pfizer

      Public
      Apache License 2.0
      •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • DeepMLAST

      Public
      Deep learning project for automated semantic segmentation of spontaneous lung tumors in murine microCT
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023

    • moa-profiler

      Public
      Python
      •
      Apache License 2.0
      •2•7•0•0•Updated Jul 28, 2023Jul 28, 2023

    • Peripheral-blood-cellular-dynamics-of-Rheumatoid-arthritis

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • torsional-strain

      Public
      Python
      •
      Apache License 2.0
      •7•20•0•0•Updated Mar 14, 2023Mar 14, 2023

    • TorsionNet

      Public
      A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM
      Jupyter Notebook
      •
      MIT License
      •16•34•1•0•Updated Mar 13, 2023Mar 13, 2023

    • mixed-mode-mpnn

      Public
      MPNNs for Modeling Retention Times from Mixed Mode Chromatography / ESI Negative MS Detection
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•0•0•Updated Mar 13, 2023Mar 13, 2023

    • MLAST

      Public
      Mouse Lung Automated Segmentation Tool
      MATLAB
      •
      Apache License 2.0
      •1•2•0•0•Updated Mar 10, 2023Mar 10, 2023

    • CTMC-NAFLD-fibrosis

      Public
      MATLAB
      •
      Apache License 2.0
      •0•2•1•0•Updated Feb 14, 2023Feb 14, 2023

    • transform-molecules

      Public
      Python
      •
      Apache License 2.0
      •3•16•0•0•Updated Feb 13, 2023Feb 13, 2023

    • pfabnet-viscosity

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •5•12•3•0•Updated Jan 9, 2023Jan 9, 2023

    • mitochondria-metabolism

      Public
      This is a mechanistic model of myocardial mitochondrial metabolism including oxidative phosphorylation, $\beta$-oxidation, TCA cycle, metaboilte transport and electrophysiology. The model is used to evaluate how substrate selection influences myocardial energetics at rest and during exercise under healthy and heart failure conditions.
      MATLAB
      •
      Apache License 2.0
      •0•2•0•0•Updated Nov 11, 2022Nov 11, 2022

    • mouse-echo-neural-net

      Public
      Python
      •
      Apache License 2.0
      •1•4•0•0•Updated Jul 21, 2022Jul 21, 2022

    • pseudo

      Public
      Python
      •
      Apache License 2.0
      •0•4•0•0•Updated Jun 28, 2022Jun 28, 2022