Repositories list

• devseg2

  Public
  Detecting densely packed nuclei in 3D with deep nets

  Python

  •1•3•0•0•Updated Dec 20, 2022Dec 20, 2022

• detsegtra

  Public
  numpy utils for cell and blob segmentation and analysis

  Python

  •0•2•0•0•Updated Dec 17, 2022Dec 17, 2022

• napari-kics

  Public
  A plugin to estimate chromosome sizes from karyotype images.

  image-processingchromosomessize-estimation+ 1napari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•6•0•0•Updated Jun 13, 2022Jun 13, 2022

• phasenet

  Public
  Fast and accurate aberration estimation from 3D bead images using convolutional neural networks

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •5•18•0•0•Updated Feb 16, 2022Feb 16, 2022

• unet-smfish-seg

  Public
  models for pixelwise classification of zebrafish cryosection cell membranes

  Python

  •0•1•0•0•Updated Jan 31, 2022Jan 31, 2022

• structured_N2V

  Public
  Code for StructN2V method and experiments

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•23•1•0•Updated Jan 22, 2022Jan 22, 2022

• micro-manager

  Public
  Microscope control and image acquisition integrated with ImageJ.

  C++

  •230•0•0•0•Updated Jan 28, 2020Jan 28, 2020

• clij-docs

  Public
  Online documentation and reference for CLIJ

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •7•1•0•0•Updated Apr 22, 2019Apr 22, 2019

• image_overlay_animation

  Public
  2•4•0•0•Updated Apr 13, 2019Apr 13, 2019

• clearopenspim

  Public
  Java

  •1•2•0•0•Updated Mar 29, 2019Mar 29, 2019

• jupyterNotebooks

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 22, 2018Nov 22, 2018

• stackview

  Public
  View your ndarrays with matplotlib!

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Jun 2, 2018Jun 2, 2018

• zeromqtest

  Public
  Playground for how to use 0MQ

  Java

  •0•0•0•0•Updated Feb 2, 2016Feb 2, 2016