Unable to run any version above 1.12.6 in docker

[aagl]

Describe the bug
Im trying to run a small demo in a container, but hitting problems when I try run any image of version above 1.12.6. The indexer gets stuck (I guess?) and the serverlet never gets deployed. Tried running this on multiple machines with the same result. My setup is below. Am I missing something?

To Reproduce

Setup

$ mkdir -p ~/opengrok/{data,etc,src}
$ git clone https://github.com/githubtraining/hellogitworld.git ~/opengrok/src/hellogitworld
$ tree
.
├── data
├── etc
└── src
    └── hellogitworld
        ├── build.gradle
        ├── fix.txt
        ├── pom.xml
        ├── README.txt
        ├── resources
        │   └── labels.properties
        ├── runme.sh
        └── src
            ├── Division.groovy
            ├── main
            │   └── java
            │       └── com
            │           └── github
            │               └── App.java
            ├── Main.groovy
            ├── Square.groovy
            ├── Subtract.groovy
            ├── Sum.groovy
            └── test
                └── java
                    └── com
                        └── github
                            └── AppTest.java

1.12.7+:

$ docker run \
        --env OPENGROK_LOG_LEVEL="DEBUG" \
        --env AVOID_PROJECTS="" \
        --publish 8080:8080 \
        --name opengrok \
        --volume "/home/a/opengrok/data/:/opengrok/data/" \
        --volume "/home/a/opengrok/src/:/opengrok/src/" \
        --volume "/home/a/opengrok/etc/:/opengrok/etc/" \
        opengrok/docker:1.12.7
2023-06-08 16:43:36,899     INFO opengrok_tools | Running version 1.12.7
2023-06-08 16:43:36,899    DEBUG opengrok_tools | URL_ROOT =
2023-06-08 16:43:36,899    DEBUG opengrok_tools | URI = http://localhost:8080/
2023-06-08 16:43:36,899     INFO opengrok_tools | synchronization period = 10 minutes
2023-06-08 16:43:36,899     INFO opengrok_tools | Deploying web application
2023-06-08 16:43:36,899    DEBUG opengrok_tools | Repacking /opengrok/lib/source.war with custom configuration path to /tmp/OpenGroktmpWaryp2_ah7a.war
2023-06-08 16:43:37,537    DEBUG opengrok_tools | Performing substitution of '/var/opengrok/etc/configuration.xml' with '/opengrok/etc/configuration.xml'
2023-06-08 16:43:38,305    DEBUG opengrok_tools | Installing '/tmp/OpenGroktmpWaryp2_ah7a.war' to '/usr/local/tomcat/webapps/ROOT.war'
2023-06-08 16:43:38,327    DEBUG opengrok_tools | Setting up redirect from /source to ''
2023-06-08 16:43:38,327    DEBUG opengrok_tools | Extra environment: {}
2023-06-08 16:43:38,327     INFO opengrok_tools | Creating bare configuration in /opengrok/etc/configuration.xml
2023-06-08 16:43:38,327    DEBUG opengrok_tools | hg = /usr/bin/hg
2023-06-08 16:43:38,327    DEBUG opengrok_tools | cvs = /usr/bin/cvs
2023-06-08 16:43:38,328    DEBUG opengrok_tools | svn = /usr/bin/svn
2023-06-08 16:43:38,328    DEBUG opengrok_tools | sccs = /usr/bin/sccs
2023-06-08 16:43:38,328    DEBUG opengrok_tools | p4 = /usr/bin/p4
2023-06-08 16:43:38,328    DEBUG opengrok_tools | blame = /usr/bin/blame
2023-06-08 16:43:38,328    DEBUG opengrok_tools | bzr = /usr/bin/bzr
2023-06-08 16:43:38,328    DEBUG opengrok_tools | Java options: ['-Dorg.opengrok.indexer.history.RCS=/usr/bin/blame', '-Dorg.opengrok.indexer.history.Perforce=/usr/bin/p4', '-Dorg.opengrok.indexer.history.SCCS=/usr/bin/sccs', '-Dorg.opengrok.indexer.history.Mercurial=/usr/bin/hg', '-Dorg.opengrok.indexer.history.Bazaar=/usr/bin/bzr', '-Dorg.opengrok.indexer.history.cvs=/usr/bin/cvs', '-Dorg.opengrok.indexer.history.Subversion=/usr/bin/svn']
2023-06-08 16:43:38,328    DEBUG opengrok_tools | Could not detemine Java home using standard means, trying JAVA_HOME: /opt/java/openjdk
2023-06-08 16:43:38,328    DEBUG opengrok_tools | Java = /opt/java/openjdk/bin/java
2023-06-08 16:43:38,328    DEBUG opengrok_tools | Java command: ['/opt/java/openjdk/bin/java', '-Dorg.opengrok.indexer.history.RCS=/usr/bin/blame', '-Dorg.opengrok.indexer.history.Perforce=/usr/bin/p4', '-Dorg.opengrok.indexer.history.SCCS=/usr/bin/sccs', '-Dorg.opengrok.indexer.history.Mercurial=/usr/bin/hg', '-Dorg.opengrok.indexer.history.Bazaar=/usr/bin/bzr', '-Dorg.opengrok.indexer.history.cvs=/usr/bin/cvs', '-Dorg.opengrok.indexer.history.Subversion=/usr/bin/svn', '-jar', '/opengrok/lib/opengrok.jar', '-s', '/opengrok/src', '-d', '/opengrok/data', '-c', '/usr/local/bin/ctags', '--remote', 'on', '-H', '-S', '-W', '/opengrok/etc/configuration.xml', '--noIndex', '-P']
2023-06-08 16:43:38,328    DEBUG opengrok_tools | working directory = /usr/local/tomcat
2023-06-08 16:43:38,328    DEBUG opengrok_tools | command = '/opt/java/openjdk/bin/java -Dorg.opengrok.indexer.history.RCS=/usr/bin/blame -Dorg.opengrok.indexer.history.Perforce=/usr/bin/p4 -Dorg.opengrok.indexer.history.SCCS=/usr/bin/sccs -Dorg.opengrok.indexer.history.Mercurial=/usr/bin/hg -Dorg.opengrok.indexer.history.Bazaar=/usr/bin/bzr -Dorg.opengrok.indexer.history.cvs=/usr/bin/cvs -Dorg.opengrok.indexer.history.Subversion=/usr/bin/svn -jar /opengrok/lib/opengrok.jar -s /opengrok/src -d /opengrok/data -c /usr/local/bin/ctags --remote on -H -S -W /opengrok/etc/configuration.xml --noIndex -P'
2023-06-08 16:43:38,328    DEBUG opengrok_tools | Waiting for process with PID 7
2023-06-08 16:43:38,492     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.index.Indexer parseOptions
2023-06-08 16:43:38,492     INFO opengrok_tools | INFO: Indexer options: [-s, /opengrok/src, -d, /opengrok/data, -c, /usr/local/bin/ctags, --remote, on, -H, -S, -W, /opengrok/etc/configuration.xml, --noIndex, -P]
2023-06-08 16:43:38,591     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.index.Indexer main
2023-06-08 16:43:38,591     INFO opengrok_tools | INFO: Indexer version 1.12.7 (0ae60b5aaefb4ebcf29ee74970ba614593850293) running on Java 11.0.19
2023-06-08 16:43:38,647     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 16:43:38,647     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.asax.Asax.ASAX" in "langmap" option
2023-06-08 16:43:38,647     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 16:43:38,647     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.ascx.Ascx.ASCX" in "langmap" option
2023-06-08 16:43:38,647     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 16:43:38,648     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.aspx.Aspx.ASPX" in "langmap" option
2023-06-08 16:43:38,648     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 16:43:38,648     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.htm.Htm.HTM" in "langmap" option
2023-06-08 16:43:38,648     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 16:43:38,648     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.html.Html.HTML" in "langmap" option
2023-06-08 16:43:38,648     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 16:43:38,648     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.master.Master.MASTER" in "langmap" option
2023-06-08 16:43:38,649     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 16:43:38,649     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.xaml.Xaml.XAML" in "langmap" option
2023-06-08 16:43:38,649     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 16:43:38,649     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.xml.Xml.XML" in "langmap" option
2023-06-08 16:43:38,660     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.configuration.RuntimeEnvironment validateUniversalCtags
2023-06-08 16:43:38,660     INFO opengrok_tools | INFO: Using ctags: Universal Ctags 6.0.0(3547021a), Copyright (C) 2015-2022 Universal Ctags Team
2023-06-08 16:43:38,660     INFO opengrok_tools | Universal Ctags is derived from Exuberant Ctags.
2023-06-08 16:43:38,660     INFO opengrok_tools | Exuberant Ctags 5.8, Copyright (C) 1996-2009 Darren Hiebert
2023-06-08 16:43:38,660     INFO opengrok_tools |   Compiled: May 18 2023, 17:06:53
2023-06-08 16:43:38,660     INFO opengrok_tools |   URL: https://ctags.io/
2023-06-08 16:43:38,660     INFO opengrok_tools |   Output version: 0.0
2023-06-08 16:43:38,660     INFO opengrok_tools |   Optional compiled features: +wildcards, +regex, +iconv, +option-directory, +packcc, +optscript
2023-06-08 16:43:38,668     INFO opengrok_tools | Jun 08, 2023 4:43:38 PM org.opengrok.indexer.index.Indexer prepareIndexer
2023-06-08 16:43:38,669     INFO opengrok_tools | INFO: Scanning for repositories in [/opengrok/src/hellogitworld] (down to 3 levels below source root)
2023-06-08 16:43:38,684     INFO opengrok_tools | SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
2023-06-08 16:43:38,684     INFO opengrok_tools | SLF4J: Defaulting to no-operation (NOP) logger implementation
2023-06-08 16:43:38,684     INFO opengrok_tools | SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
2023-06-08 16:43:41,781     INFO opengrok_tools | Jun 08, 2023 4:43:41 PM org.opengrok.indexer.util.Statistics logIt
2023-06-08 16:43:41,781     INFO opengrok_tools | INFO: Done scanning for repositories, found 1 repositories (took 3.111 seconds)
2023-06-08 16:43:41,787     INFO opengrok_tools | Jun 08, 2023 4:43:41 PM org.opengrok.indexer.util.Statistics logIt
2023-06-08 16:43:41,787     INFO opengrok_tools | INFO: Done invalidating repositories (1 valid, 1 working) (took 5 ms)
2023-06-08 16:43:41,789     INFO opengrok_tools | Jun 08, 2023 4:43:41 PM org.opengrok.indexer.index.Indexer writeConfigToFile
2023-06-08 16:43:41,789     INFO opengrok_tools | INFO: Writing configuration to '/opengrok/etc/configuration.xml'
2023-06-08 16:43:41,870     INFO opengrok_tools | Jun 08, 2023 4:43:41 PM org.opengrok.indexer.index.Indexer writeConfigToFile
2023-06-08 16:43:41,870     INFO opengrok_tools | INFO: Done writing configuration to '/opengrok/etc/configuration.xml'
2023-06-08 16:43:41,871     INFO opengrok_tools | Jun 08, 2023 4:43:41 PM org.opengrok.indexer.util.Statistics logIt
2023-06-08 16:43:41,871     INFO opengrok_tools | INFO: Indexer finished (took 3.436 seconds)

Nothing happens after this point. The same behavior with any version above 1.12.6.

1.12.6:

docker run \
       --env OPENGROK_LOG_LEVEL="DEBUG" \
        --env AVOID_PROJECTS="" \
        --publish 8080:8080 \
        --name opengrok \
        --volume "/home/a/opengrok/data/:/opengrok/data/" \
        --volume "/home/a/opengrok/src/:/opengrok/src/" \
        --volume "/home/a/opengrok/etc/:/opengrok/etc/" \
        opengrok/docker:1.12.6
2023-06-08 17:22:48,707     INFO opengrok_tools | Running version 1.12.6
2023-06-08 17:22:48,707    DEBUG opengrok_tools | URL_ROOT =
2023-06-08 17:22:48,707    DEBUG opengrok_tools | URI = http://localhost:8080/
2023-06-08 17:22:48,707     INFO opengrok_tools | synchronization period = 10 minutes
2023-06-08 17:22:48,707     INFO opengrok_tools | Deploying web application
2023-06-08 17:22:48,708    DEBUG opengrok_tools | Repacking /opengrok/lib/source.war with custom configuration path to /tmp/OpenGroktmpWarmf2g_i98.war
2023-06-08 17:22:49,461    DEBUG opengrok_tools | Performing substitution of '/var/opengrok/etc/configuration.xml' with '/opengrok/etc/configuration.xml'
2023-06-08 17:22:50,114    DEBUG opengrok_tools | Installing '/tmp/OpenGroktmpWarmf2g_i98.war' to '/usr/local/tomcat/webapps/ROOT.war'
2023-06-08 17:22:50,137    DEBUG opengrok_tools | Setting up redirect from /source to ''
2023-06-08 17:22:50,138    DEBUG opengrok_tools | Extra environment: {}
2023-06-08 17:22:50,138     INFO opengrok_tools | Creating bare configuration in /opengrok/etc/configuration.xml
2023-06-08 17:22:50,138    DEBUG opengrok_tools | hg = /usr/bin/hg
2023-06-08 17:22:50,138    DEBUG opengrok_tools | cvs = /usr/bin/cvs
2023-06-08 17:22:50,138    DEBUG opengrok_tools | svn = /usr/bin/svn
2023-06-08 17:22:50,138    DEBUG opengrok_tools | sccs = /usr/bin/sccs
2023-06-08 17:22:50,138    DEBUG opengrok_tools | p4 = /usr/bin/p4
2023-06-08 17:22:50,138    DEBUG opengrok_tools | blame = /usr/bin/blame
2023-06-08 17:22:50,138    DEBUG opengrok_tools | bzr = /usr/bin/bzr
2023-06-08 17:22:50,138    DEBUG opengrok_tools | Java options: ['-Dorg.opengrok.indexer.history.SCCS=/usr/bin/sccs', '-Dorg.opengrok.indexer.history.Perforce=/usr/bin/p4', '-Dorg.opengrok.indexer.history.RCS=/usr/bin/blame', '-Dorg.opengrok.indexer.history.Mercurial=/usr/bin/hg', '-Dorg.opengrok.indexer.history.Subversion=/usr/bin/svn', '-Dorg.opengrok.indexer.history.Bazaar=/usr/bin/bzr', '-Dorg.opengrok.indexer.history.cvs=/usr/bin/cvs']
2023-06-08 17:22:50,138    DEBUG opengrok_tools | Could not detemine Java home using standard means, trying JAVA_HOME: /opt/java/openjdk
2023-06-08 17:22:50,138    DEBUG opengrok_tools | Java = /opt/java/openjdk/bin/java
2023-06-08 17:22:50,138    DEBUG opengrok_tools | Java command: ['/opt/java/openjdk/bin/java', '-Dorg.opengrok.indexer.history.SCCS=/usr/bin/sccs', '-Dorg.opengrok.indexer.history.Perforce=/usr/bin/p4', '-Dorg.opengrok.indexer.history.RCS=/usr/bin/blame', '-Dorg.opengrok.indexer.history.Mercurial=/usr/bin/hg', '-Dorg.opengrok.indexer.history.Subversion=/usr/bin/svn', '-Dorg.opengrok.indexer.history.Bazaar=/usr/bin/bzr', '-Dorg.opengrok.indexer.history.cvs=/usr/bin/cvs', '-jar', '/opengrok/lib/opengrok.jar', '-s', '/opengrok/src', '-d', '/opengrok/data', '-c', '/usr/local/bin/ctags', '--remote', 'on', '-H', '-S', '-W', '/opengrok/etc/configuration.xml', '--noIndex', '-P']
2023-06-08 17:22:50,139    DEBUG opengrok_tools | working directory = /usr/local/tomcat
2023-06-08 17:22:50,139    DEBUG opengrok_tools | command = '/opt/java/openjdk/bin/java -Dorg.opengrok.indexer.history.SCCS=/usr/bin/sccs -Dorg.opengrok.indexer.history.Perforce=/usr/bin/p4 -Dorg.opengrok.indexer.history.RCS=/usr/bin/blame -Dorg.opengrok.indexer.history.Mercurial=/usr/bin/hg -Dorg.opengrok.indexer.history.Subversion=/usr/bin/svn -Dorg.opengrok.indexer.history.Bazaar=/usr/bin/bzr -Dorg.opengrok.indexer.history.cvs=/usr/bin/cvs -jar /opengrok/lib/opengrok.jar -s /opengrok/src -d /opengrok/data -c /usr/local/bin/ctags --remote on -H -S -W /opengrok/etc/configuration.xml --noIndex -P'
2023-06-08 17:22:50,139    DEBUG opengrok_tools | Waiting for process with PID 8
2023-06-08 17:22:50,283     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.index.Indexer parseOptions
2023-06-08 17:22:50,283     INFO opengrok_tools | INFO: Indexer options: [-s, /opengrok/src, -d, /opengrok/data, -c, /usr/local/bin/ctags, --remote, on, -H, -S, -W, /opengrok/etc/configuration.xml, --noIndex, -P]
2023-06-08 17:22:50,387     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.index.Indexer main
2023-06-08 17:22:50,387     INFO opengrok_tools | INFO: Indexer version 1.12.6 (378387fce9ab8768e5ad9875175fbe32329613b3) running on Java 11.0.19
2023-06-08 17:22:50,446     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 17:22:50,446     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.asax.Asax.ASAX" in "langmap" option
2023-06-08 17:22:50,446     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 17:22:50,446     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.ascx.Ascx.ASCX" in "langmap" option
2023-06-08 17:22:50,446     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 17:22:50,446     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.aspx.Aspx.ASPX" in "langmap" option
2023-06-08 17:22:50,446     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 17:22:50,446     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.htm.Htm.HTM" in "langmap" option
2023-06-08 17:22:50,447     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 17:22:50,447     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.html.Html.HTML" in "langmap" option
2023-06-08 17:22:50,447     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 17:22:50,447     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.master.Master.MASTER" in "langmap" option
2023-06-08 17:22:50,447     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 17:22:50,447     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.xaml.Xaml.XAML" in "langmap" option
2023-06-08 17:22:50,448     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.analysis.Ctags lambda$run$0
2023-06-08 17:22:50,448     INFO opengrok_tools | WARNING: Error from ctags: ctags: Warning: Unknown language "XML:+.xml.Xml.XML" in "langmap" option
2023-06-08 17:22:50,458     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.configuration.RuntimeEnvironment validateUniversalCtags
2023-06-08 17:22:50,458     INFO opengrok_tools | INFO: Using ctags: Universal Ctags 6.0.0(882b6c7f), Copyright (C) 2015-2022 Universal Ctags Team
2023-06-08 17:22:50,458     INFO opengrok_tools | Universal Ctags is derived from Exuberant Ctags.
2023-06-08 17:22:50,458     INFO opengrok_tools | Exuberant Ctags 5.8, Copyright (C) 1996-2009 Darren Hiebert
2023-06-08 17:22:50,458     INFO opengrok_tools |   Compiled: May 11 2023, 09:51:28
2023-06-08 17:22:50,458     INFO opengrok_tools |   URL: https://ctags.io/
2023-06-08 17:22:50,458     INFO opengrok_tools |   Output version: 0.0
2023-06-08 17:22:50,458     INFO opengrok_tools |   Optional compiled features: +wildcards, +regex, +iconv, +option-directory, +packcc, +optscript
2023-06-08 17:22:50,464     INFO opengrok_tools | Jun 08, 2023 5:22:50 PM org.opengrok.indexer.index.Indexer prepareIndexer
2023-06-08 17:22:50,464     INFO opengrok_tools | INFO: Scanning for repositories in [/opengrok/src/hellogitworld] (down to 3 levels below source root)
2023-06-08 17:22:50,476     INFO opengrok_tools | SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
2023-06-08 17:22:50,476     INFO opengrok_tools | SLF4J: Defaulting to no-operation (NOP) logger implementation
2023-06-08 17:22:50,476     INFO opengrok_tools | SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
2023-06-08 17:22:53,578     INFO opengrok_tools | Jun 08, 2023 5:22:53 PM org.opengrok.indexer.util.Statistics logIt
2023-06-08 17:22:53,578     INFO opengrok_tools | INFO: Done scanning for repositories, found 1 repositories (took 3.112 seconds)
2023-06-08 17:22:53,584     INFO opengrok_tools | Jun 08, 2023 5:22:53 PM org.opengrok.indexer.util.Statistics logIt
2023-06-08 17:22:53,584     INFO opengrok_tools | INFO: Done invalidating repositories (1 valid, 1 working) (took 5 ms)
2023-06-08 17:22:53,586     INFO opengrok_tools | Jun 08, 2023 5:22:53 PM org.opengrok.indexer.index.Indexer writeConfigToFile
2023-06-08 17:22:53,586     INFO opengrok_tools | INFO: Writing configuration to '/opengrok/etc/configuration.xml'
2023-06-08 17:22:53,667     INFO opengrok_tools | Jun 08, 2023 5:22:53 PM org.opengrok.indexer.index.Indexer writeConfigToFile
2023-06-08 17:22:53,667     INFO opengrok_tools | INFO: Done writing configuration to '/opengrok/etc/configuration.xml'
2023-06-08 17:22:53,668     INFO opengrok_tools | Jun 08, 2023 5:22:53 PM org.opengrok.indexer.util.Statistics logIt
2023-06-08 17:22:53,668     INFO opengrok_tools | INFO: Indexer finished (took 3.440 seconds)
2023-06-08 17:22:56,539    DEBUG opengrok_tools | Done waiting
2023-06-08 17:22:56,539    DEBUG opengrok_tools | '/opt/java/openjdk/bin/java -Dorg.opengrok.indexer.history.SCCS=/usr/bin/sccs -Dorg.opengrok.indexer.history.Perforce=/usr/bin/p4 -Dorg.opengrok.indexer.history.RCS=/usr/bin/blame -Dorg.opengrok.indexer.history.Mercurial=/usr/bin/hg -Dorg.opengrok.indexer.history.Subversion=/usr/bin/svn -Dorg.opengrok.indexer.history.Bazaar=/usr/bin/bzr -Dorg.opengrok.indexer.history.cvs=/usr/bin/cvs -jar /opengrok/lib/opengrok.jar -s /opengrok/src -d /opengrok/data -c /usr/local/bin/ctags --remote on -H -S -W /opengrok/etc/configuration.xml --noIndex -P' -> 0
2023-06-08 17:22:56,539    DEBUG opengrok_tools | closed
2023-06-08 17:22:56,539    DEBUG opengrok_tools | Waiting on output thread to finish reading
2023-06-08 17:22:56,539    DEBUG opengrok_tools | end of output
2023-06-08 17:22:56,540    DEBUG opengrok_tools | Command '/opt/java/openjdk/bin/java -Dorg.opengrok.indexer.history.SCCS=/usr/bin/sccs -Dorg.opengrok.indexer.history.Perforce=/usr/bin/p4 -Dorg.opengrok.indexer.history.RCS=/usr/bin/blame -Dorg.opengrok.indexer.history.Mercurial=/usr/bin/hg -Dorg.opengrok.indexer.history.Subversion=/usr/bin/svn -Dorg.opengrok.indexer.history.Bazaar=/usr/bin/bzr -Dorg.opengrok.indexer.history.cvs=/usr/bin/cvs -jar /opengrok/lib/opengrok.jar -s /opengrok/src -d /opengrok/data -c /usr/local/bin/ctags --remote on -H -S -W /opengrok/etc/configuration.xml --noIndex -P' took 6 seconds
2023-06-08 17:22:56,540     INFO opengrok_tools | Number of sync workers: 20
2023-06-08 17:22:56,540    DEBUG opengrok_tools | trying JSON
2023-06-08 17:22:56,540    DEBUG opengrok_tools | got exception <class 'json.decoder.JSONDecodeError'>
2023-06-08 17:22:56,540    DEBUG opengrok_tools | trying YAML
2023-06-08 17:22:56,540     INFO opengrok_tools | Checking mirror configuration in '/opengrok/etc/mirror.yml'
2023-06-08 17:22:56,540    DEBUG opengrok_tools | Creating and starting periodic timer (period 600 seconds)
2023-06-08 17:22:56,540    DEBUG opengrok_tools | Starting sync thread
2023-06-08 17:22:56,540     INFO opengrok_tools | Waiting for Tomcat to start
2023-06-08 17:22:56,540    DEBUG opengrok_tools | Starting REST thread to listen for requests on port 5000 on the /reindex endpoint
2023-06-08 17:22:56,541     INFO opengrok_tools | Starting REST app on port 5000
2023-06-08 17:22:56,541     INFO opengrok_tools | Starting Tomcat
2023-06-08 17:22:56,543    DEBUG opengrok_tools | Got status 0 for http://localhost:8080/, sleeping for 1 second
08-Jun-2023 17:22:56.748 WARNING [main] org.apache.tomcat.util.digester.Digester.endElement No rules found matching [Server/Service/Engine/Host/Disabled]
08-Jun-2023 17:22:56.750 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name:   Apache Tomcat/10.1.8
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built:          Apr 14 2023 19:40:29 UTC
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 10.1.8.0
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name:               Linux
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version:            6.3.6-arch1-1
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture:          amd64
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home:             /opt/java/openjdk
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version:           11.0.19+7
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor:            Eclipse Adoptium
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE:         /usr/local/tomcat
08-Jun-2023 17:22:56.751 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME:         /usr/local/tomcat
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/usr/local/tomcat/conf/logging.properties
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.util=ALL-UNNAMED
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.util.concurrent=ALL-UNNAMED
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/usr/local/tomcat
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/local/tomcat
08-Jun-2023 17:22:56.757 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opengrok/data/tomcat_temp
08-Jun-2023 17:22:56.759 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent Loaded Apache Tomcat Native library [2.0.3] using APR version [1.7.0].
08-Jun-2023 17:22:56.761 INFO [main] org.apache.catalina.core.AprLifecycleListener.initializeSSL OpenSSL successfully initialized [OpenSSL 3.0.2 15 Mar 2022]
08-Jun-2023 17:22:56.923 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
08-Jun-2023 17:22:56.937 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [285] milliseconds
08-Jun-2023 17:22:56.960 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
08-Jun-2023 17:22:56.960 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/10.1.8]
08-Jun-2023 17:22:56.976 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/usr/local/tomcat/webapps/ROOT.war]
08-Jun-2023 17:22:56.983 WARNING [main] org.apache.tomcat.util.digester.SetPropertiesRule.begin Match [Context] failed to set property [antiJARLocking] to [true]
08-Jun-2023 17:22:58.497 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
08-Jun-2023 17:22:58.556 INFO [main] org.opengrok.indexer.Metrics.<clinit> configuring PrometheusRegistry
08-Jun-2023 17:22:58.602 INFO [main] org.opengrok.web.WebappListener.contextInitialized Starting webapp with version 1.12.6 (378387fce9ab8768e5ad9875175fbe32329613b3)
08-Jun-2023 17:22:58.602 INFO [main] org.opengrok.indexer.configuration.Configuration.read Reading configuration from /opengrok/etc/configuration.xml
08-Jun-2023 17:22:58.745 INFO [main] org.opengrok.indexer.util.Statistics.logIt Done invalidating repositories (1 valid, 1 working) (took 111 ms)
08-Jun-2023 17:22:58.749 INFO [main] org.opengrok.web.WebappListener.contextInitialized running inside Apache Tomcat/10.1.8
08-Jun-2023 17:22:58.751 WARNING [main] org.opengrok.indexer.framework.PluginFramework.reload Plugin directory not found or not readable: /opengrok/data/../plugins. All requests allowed.
08-Jun-2023 17:22:58.926 INFO [Thread-4] org.opengrok.suggest.Suggester.init No index directories found, exiting...
08-Jun-2023 17:22:58.935 INFO [Thread-4] org.opengrok.web.api.v1.suggester.provider.service.impl.SuggesterServiceImpl.scheduleRebuild Scheduling suggester rebuild in PT6H37M1.072515S
08-Jun-2023 17:22:59.303 INFO [main] org.hibernate.validator.internal.util.Version.<clinit> HV000001: Hibernate Validator 8.0.0.Final
08-Jun-2023 17:23:00.528 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/usr/local/tomcat/webapps/ROOT.war] has finished in [3,552] ms
08-Jun-2023 17:23:00.529 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/source]
08-Jun-2023 17:23:00.536 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/source] has finished in [7] ms
08-Jun-2023 17:23:00.538 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
08-Jun-2023 17:23:00.545 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [3608] milliseconds
2023-06-08 17:23:01,193     INFO opengrok_tools | Tomcat is ready
2023-06-08 17:23:01,193    DEBUG opengrok_tools.utils.restful | GET API call: http://localhost:8080/api/v1/projects with data 'None', connect timeout 8 seconds, API timeout None seconds and headers: None
2023-06-08 17:23:01,255    DEBUG opengrok_tools.utils.restful | API call result: <Response [200]>
2023-06-08 17:23:01,255    DEBUG opengrok_tools | Projects from the web app: ['hellogitworld']
2023-06-08 17:23:01,255    DEBUG opengrok_tools | Got item hellogitworld
2023-06-08 17:23:01,255    DEBUG opengrok_tools | trying JSON
2023-06-08 17:23:01,255    DEBUG opengrok_tools | got exception <class 'json.decoder.JSONDecodeError'>
2023-06-08 17:23:01,255    DEBUG opengrok_tools | trying YAML
2023-06-08 17:23:01,259    DEBUG opengrok_tools.utils.restful | GET API call: http://localhost:8080/api/v1/projects with data 'None', connect timeout 8 seconds, API timeout None seconds and headers: None
2023-06-08 17:23:01,263    DEBUG opengrok_tools.utils.restful | API call result: <Response [200]>
2023-06-08 17:23:01,263     INFO opengrok_tools | Sync starting
2023-06-08 17:23:01,281    DEBUG opengrok_tools.utils.restful | Headers from the ApiCall object: {}
2023-06-08 17:23:01,281    DEBUG opengrok_tools.utils.restful | Performing URI substitutions
2023-06-08 17:23:01,281    DEBUG opengrok_tools.utils.restful | URI after the substitutions: http://localhost:8080/api/v1/messages
2023-06-08 17:23:01,281    DEBUG opengrok_tools.utils.restful | Setting connect/read API timeout based on the call to 8
2023-06-08 17:23:01,281    DEBUG opengrok_tools.utils.restful | Adding HTTP header: Content-Type = application/json
2023-06-08 17:23:01,281    DEBUG opengrok_tools.utils.restful | Converting {'messageLevel': 'warning', 'duration': 'PT1H', 'tags': ['%PROJECT%'], 'text': 'resync + reindex in progress'} to JSON
2023-06-08 17:23:01,281    DEBUG opengrok_tools.utils.restful | entity data: {"messageLevel": "warning", "duration": "PT1H", "tags": ["hellogitworld"], "text": "resync + reindex in progress"}
2023-06-08 17:23:01,281    DEBUG opengrok_tools.utils.restful | POST API call: http://localhost:8080/api/v1/messages with data '{"messageLevel": "warning", "duration": "PT1H", "tags": ["hellogitworld"], "text": "resync + reindex in progress"}', connect timeout 8 seconds, API timeout None seconds and headers: {'Content-Type': 'application/json'}
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.restful | API call result: <Response [201]>
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.commandsequence | treating $API_TIMEOUT as environment variable
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.commandsequence | replacing '%API_TIMEOUT%' in '%API_TIMEOUT%' with '8'
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.commandsequence | replaced argument with 8
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.commandsequence | replacing '%URL%' in '%URL%' with 'http://localhost:8080/'
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.commandsequence | replaced argument with http://localhost:8080/
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.commandsequence | replacing '%PROJECT%' in '%PROJECT%' with 'hellogitworld'
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.commandsequence | replaced argument with hellogitworld
2023-06-08 17:23:01,358    DEBUG opengrok_tools.utils.commandsequence | working directory = /usr/local/tomcat
2023-06-08 17:23:01,359    DEBUG opengrok_tools.utils.commandsequence | command = 'opengrok-mirror -c /opengrok/etc/mirror.yml --api_timeout 8 -I -U http://localhost:8080/ hellogitworld'
2023-06-08 17:23:01,359    DEBUG opengrok_tools.utils.commandsequence | Waiting for process with PID 327
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.commandsequence | Done waiting
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.commandsequence | 'opengrok-mirror -c /opengrok/etc/mirror.yml --api_timeout 8 -I -U http://localhost:8080/ hellogitworld' -> 1
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.commandsequence | closed
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.commandsequence | Waiting on output thread to finish reading
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.commandsequence | end of output
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.commandsequence | Command 'opengrok-mirror -c /opengrok/etc/mirror.yml --api_timeout 8 -I -U http://localhost:8080/ hellogitworld' took 0 seconds
2023-06-08 17:23:01,554    ERROR opengrok_tools.utils.commandsequence | command 'opengrok-mirror -c /opengrok/etc/mirror.yml --api_timeout 8 -I -U http://localhost:8080/ hellogitworld' for project hellogitworld failed with code 1, breaking
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.restful | Headers from the ApiCall object: {'Content-type': 'text/plain'}
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.restful | Performing URI substitutions
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.restful | URI after the substitutions: http://localhost:8080/api/v1/messages?tag=hellogitworld
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.restful | Setting connect/read API timeout based on the call to 8
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.restful | entity data: resync + reindex in progress
2023-06-08 17:23:01,554    DEBUG opengrok_tools.utils.restful | DELETE API call: http://localhost:8080/api/v1/messages?tag=hellogitworld with data 'resync + reindex in progress', connect timeout 8 seconds, API timeout None seconds and headers: {'Content-type': 'text/plain'}
2023-06-08 17:23:01,557    DEBUG opengrok_tools.utils.restful | API call result: <Response [204]>
2023-06-08 17:23:01,558    DEBUG opengrok_tools.utils.commandsequence | Output for project 'hellogitworld':
2023-06-08 17:23:01,558    DEBUG opengrok_tools.utils.commandsequence | 'opengrok-mirror -c /opengrok/etc/mirror.yml --api_timeout 8 -I -U http://localhost:8080/ hellogitworld': ['DEBUG:filelock:Attempting to acquire lock 140512397905584 on /tmp/hellogitworld-mirror.lock\n', 'DEBUG:filelock:Lock 140512397905584 acquired on /tmp/hellogitworld-mirror.lock\n', 'Project hellogitworld has not been indexed yet, overriding incoming check\n', 'Synchronizing repository /opengrok/src/hellogitworld\n', "failed to configure git pull.ff: command ['/usr/bin/git', 'config', '--local', 'pull.ff', 'only'] in directory /opengrok/src/hellogitworld exited with 128\n", "failed to perform command ['/usr/bin/git', 'pull', '--ff-only']: command ['/usr/bin/git', 'pull', '--ff-only'] in directory /opengrok/src/hellogitworld exited with 128\n", "output of '['/usr/bin/git', 'pull', '--ff-only']':\n", "fatal: detected dubious ownership in repository at '/opengrok/src/hellogitworld'\n", 'To add an exception for this directory, call:\n', '\n', '\tgit config --global --add safe.directory /opengrok/src/hellogitworld\n', 'failed to synchronize repository /opengrok/src/hellogitworld\n', 'DEBUG:filelock:Attempting to release lock 140512397905584 on /tmp/hellogitworld-mirror.lock\n', 'DEBUG:filelock:Lock 140512397905584 released on /tmp/hellogitworld-mirror.lock\n']
2023-06-08 17:23:01,558    DEBUG opengrok_tools.utils.commandsequence | retcodes = {'opengrok-mirror -c /opengrok/etc/mirror.yml --api_timeout 8 -I -U http://localhost:8080/ hellogitworld': 1}
2023-06-08 17:23:01,558    ERROR opengrok_tools.utils.commandsequence | processing of project 'hellogitworld' failed
2023-06-08 17:23:01,558    ERROR opengrok_tools.utils.commandsequence |   failed commands:
2023-06-08 17:23:01,558    ERROR opengrok_tools.utils.commandsequence |     'opengrok-mirror -c /opengrok/etc/mirror.yml --api_timeout 8 -I -U http://localhost:8080/ hellogitworld': 1
2023-06-08 17:23:01,558    ERROR opengrok_tools.utils.commandsequence |       DEBUG:filelock:Attempting to acquire lock 140512397905584 on /tmp/hellogitworld-mirror.lock
      DEBUG:filelock:Lock 140512397905584 acquired on /tmp/hellogitworld-mirror.lock
      Project hellogitworld has not been indexed yet, overriding incoming check
      Synchronizing repository /opengrok/src/hellogitworld
      failed to configure git pull.ff: command ['/usr/bin/git', 'config', '--local', 'pull.ff', 'only'] in directory /opengrok/src/hellogitworld exited with 128
      failed to perform command ['/usr/bin/git', 'pull', '--ff-only']: command ['/usr/bin/git', 'pull', '--ff-only'] in directory /opengrok/src/hellogitworld exited with 128
      output of '['/usr/bin/git', 'pull', '--ff-only']':
      fatal: detected dubious ownership in repository at '/opengrok/src/hellogitworld'
      To add an exception for this directory, call:

        git config --global --add safe.directory /opengrok/src/hellogitworld
      failed to synchronize repository /opengrok/src/hellogitworld
      DEBUG:filelock:Attempting to release lock 140512397905584 on /tmp/hellogitworld-mirror.lock
      DEBUG:filelock:Lock 140512397905584 released on /tmp/hellogitworld-mirror.lock

2023-06-08 17:23:01,558    ERROR opengrok_tools.utils.commandsequence |
2023-06-08 17:23:01,558    DEBUG opengrok_tools | Output for project 'hellogitworld':
2023-06-08 17:23:01,558     INFO opengrok_tools | Output from 'opengrok-mirror -c /opengrok/etc/mirror.yml --api_timeout 8 -I -U http://localhost:8080/ hellogitworld':
2023-06-08 17:23:01,558     INFO opengrok_tools | DEBUG:filelock:Attempting to acquire lock 140512397905584 on /tmp/hellogitworld-mirror.lock
DEBUG:filelock:Lock 140512397905584 acquired on /tmp/hellogitworld-mirror.lock
Project hellogitworld has not been indexed yet, overriding incoming check
Synchronizing repository /opengrok/src/hellogitworld
failed to configure git pull.ff: command ['/usr/bin/git', 'config', '--local', 'pull.ff', 'only'] in directory /opengrok/src/hellogitworld exited with 128
failed to perform command ['/usr/bin/git', 'pull', '--ff-only']: command ['/usr/bin/git', 'pull', '--ff-only'] in directory /opengrok/src/hellogitworld exited with 128
output of '['/usr/bin/git', 'pull', '--ff-only']':
fatal: detected dubious ownership in repository at '/opengrok/src/hellogitworld'
To add an exception for this directory, call:

        git config --global --add safe.directory /opengrok/src/hellogitworld
failed to synchronize repository /opengrok/src/hellogitworld
DEBUG:filelock:Attempting to release lock 140512397905584 on /tmp/hellogitworld-mirror.lock
DEBUG:filelock:Lock 140512397905584 released on /tmp/hellogitworld-mirror.lock

2023-06-08 17:23:01,561     INFO opengrok_tools | Sync done
2023-06-08 17:23:01,561    DEBUG opengrok_tools.utils.restful | GET API call: http://localhost:8080/api/v1/configuration with data 'None', connect timeout 8 seconds, API timeout None seconds and headers: None
2023-06-08 17:23:01,622    DEBUG opengrok_tools.utils.restful | API call result: <Response [200]>
2023-06-08 17:23:01,632     INFO opengrok_tools | Saving configuration to /opengrok/etc/configuration.xml
2023-06-08 17:23:01,632     INFO opengrok_tools | Waiting for reindex to be triggered

Work as expected, app is deployed after indexing.

Expected behavior
Should be able to run any image version.

Additional context
Arch Linux / RHEL 8.5

docker system info ARCH

Client:
 Version:    24.0.2
 Context:    default
 Debug Mode: false
 Plugins:
  buildx: Docker Buildx (Docker Inc.)
    Version:  0.10.5
    Path:     /usr/lib/docker/cli-plugins/docker-buildx

Server:
 Containers: 1
  Running: 0
  Paused: 0
  Stopped: 1
 Images: 328
 Server Version: 24.0.2
 Storage Driver: overlay2
  Backing Filesystem: extfs
  Supports d_type: true
  Using metacopy: true
  Native Overlay Diff: false
  userxattr: false
 Logging Driver: json-file
 Cgroup Driver: systemd
 Cgroup Version: 2
 Plugins:
  Volume: local
  Network: bridge host ipvlan macvlan null overlay
  Log: awslogs fluentd gcplogs gelf journald json-file local logentries splunk syslog
 Swarm: inactive
 Runtimes: io.containerd.runc.v2 runc
 Default Runtime: runc
 Init Binary: docker-init
 containerd version: 0cae528dd6cb557f7201036e9f43420650207b58.m
 runc version:
 init version: de40ad0
 Security Options:
  seccomp
   Profile: builtin
  cgroupns
 Kernel Version: 6.3.6-arch1-1
 Operating System: Arch Linux
 OSType: linux
 Architecture: x86_64
 CPUs: 20
 Total Memory: 62.67GiB
 Name: ~~~
 ID: KROM:DGNG:SVW3:XHYV:TLKB:JWN4:3POH:U2BO:RPVI:A3OD:2TQQ:Y4JP
 Docker Root Dir: /var/lib/docker
 Debug Mode: false
 Experimental: false
 Insecure Registries:
  127.0.0.0/8
 Live Restore Enabled: true

docker system info RHEL

Client: Docker Engine - Community
 Version:    24.0.2
 Context:    default
 Debug Mode: false
 Plugins:
  buildx: Docker Buildx (Docker Inc.)
    Version:  v0.10.5
    Path:     /usr/libexec/docker/cli-plugins/docker-buildx
  compose: Docker Compose (Docker Inc.)
    Version:  v2.18.1
    Path:     /usr/libexec/docker/cli-plugins/docker-compose

Server:
 Containers: 0
  Running: 0
  Paused: 0
  Stopped: 0
 Images: 2
 Server Version: 24.0.2
 Storage Driver: overlay2
  Backing Filesystem: xfs
  Supports d_type: true
  Using metacopy: false
  Native Overlay Diff: true
  userxattr: false
 Logging Driver: json-file
 Cgroup Driver: cgroupfs
 Cgroup Version: 1
 Plugins:
  Volume: local
  Network: bridge host ipvlan macvlan null overlay
  Log: awslogs fluentd gcplogs gelf journald json-file local logentries splunk syslog
 Swarm: inactive
 Runtimes: io.containerd.runc.v2 runc
 Default Runtime: runc
 Init Binary: docker-init
 containerd version: 3dce8eb055cbb6872793272b4f20ed16117344f8
 runc version: v1.1.7-0-g860f061
 init version: de40ad0
 Security Options:
  seccomp
   Profile: builtin
 Kernel Version: 4.18.0-348.el8.x86_64
 Operating System: Red Hat Enterprise Linux 8.5 (Ootpa)
 OSType: linux
 Architecture: x86_64
 CPUs: 8
 Total Memory: 15.46GiB
 Name: ~~~
 ID: 1c9cca97-7985-4433-a375-da272d12bbf1
 Docker Root Dir: /var/lib/docker
 Debug Mode: false
 Experimental: false
 Insecure Registries:
  127.0.0.0/8
 Live Restore Enabled: true

[vladak]

The first difference which is immediately obvious is that Tomcat does not start in your container with 1.12.7 or at least this is not visible in the provided log snippet. The startup program merely creates the empty configuration. It is not obvious whether something follows in the container log.

Also, I am not sure what effect do you expect from setting the AVOID_PROJECTS environment variable to empty value. If this is used to disable projects, this is not going to work. The environment variable has to have non-empty value.

[vladak]

You're right. This is a problem with stuck indexer, except it is not the indexer - it is the indexer being run to produce empty configuration.

[vladak]

Should be fixed in 1.12.11. Thanks for the detailed report !

[aagl]

@vladak Yup, 1.12.11 works great. Thank you!