History is not generated for all files in a directory #4145

sreehari83 · 2023-01-05T05:06:38Z

sreehari83
Jan 5, 2023

History is generated for only one file in a directory and skipped for all other files.

I'm using following command to generate initial index for branch

/usr/bin/java -Djava.util.logging.config.file=/data/grok/logging.properties.parallel -server \
-Xms36096m -Xmx86096m -Dorg.opensolaris.opengrok.history.Subversion=/usr/bin/svn \
-jar /data/grok/opengrok-1.7.40/lib/opengrok.jar \
-c /bin/ctags -s /data/grok/src -d /data/grok/data -H -P -S -G -W /data/grok/config.xml

Please correct me if i have missed some thing here

vladak · 2023-01-05T08:17:04Z

vladak
Jan 5, 2023
Maintainer

Not enough information to say anything.

0 replies

sreehari83 · 2023-01-05T08:56:36Z

sreehari83
Jan 5, 2023
Author

While indexing time history is not getting for many files and history is getting for some files ..

2023-01-05 06:41:42.369+0000 FINE t158 DefaultIndexChangedListener.fileAdd: Add: /RELEASE_231_THROTTLE/pfe/toolkits/pfe/pfe_if_ce.c (CAnalyzer)

2023-01-05 06:41:42.369+0000 FINE t158 HistoryGuru.getHistoryFromRepository: not getting the history for '/data/grok/src/RELEASE_THROTTLE/pfe/toolkits/pfe/pfe_if_ce.c' in repository {dir=/data/grok/src/RELEASE_THROTTLE,type=Subversion,historyCache=on,renamed=true,merge=false,annotationCache=off} as the it supports history for directories

Can you please suggest as how to get history for all the files
Please let me know if you need more information

6 replies

sreehari83 Jan 9, 2023
Author

i have an issue with 1.7.40 version only . History is not completely generating for entire branch in the repo . it's generating for partial files of branch and later index is starting.

Log:

2022-12-02 06:39:55.575+0000 FINE t1 Executor.registerErrorHandler: Installing default uncaught exception handler
2022-12-02 06:39:55.703+0000 INFO t1 Indexer.parseOptions: Indexer options: [-c, /bin/ctags, -s, /b/grok/src, -d, /b/grok/data, -H, -P, -S, -G, -W, /b/grok/configuration.xml]
2022-12-02 06:39:55.883+0000 INFO t1 Indexer.main: Indexer version 1.7.40 (b269f535bff7b65ab32ec1e4eb30c0a2e5592ca9) running on Java 11.0.16
2022-12-02 06:39:55.892+0000 FINE t1 Executor.exec: Executing command [/bin/ctags --version] in directory /b/grok
2022-12-02 06:39:55.907+0000 FINE t1 Statistics.logIt: Finished command [/bin/ctags --version] in directory /b/grok with exit code 0 (took 12 ms)
2022-12-02 06:39:55.908+0000 FINE t1 Executor.exec: Finished command [/bin/ctags --version] in directory /b/grok with exit code 0
2022-12-02 06:39:55.909+0000 INFO t1 CtagsUtil.validate: Using ctags: Universal Ctags 0.0.0, Copyright (C) 2015 Universal Ctags Team
Universal Ctags is derived from Exuberant Ctags.
Exuberant Ctags 5.8, Copyright (C) 1996-2009 Darren Hiebert
  Compiled: Jan  6 2019, 23:23:29
  URL: https://ctags.io/
  Optional compiled features: +wildcards, +regex, +iconv, +option-directory, +xpath, +json, +interactive, +sandbox, +yaml
2022-12-02 06:39:55.910+0000 FINE t1 Executor.exec: Executing command [/bin/ctags --list-languages] in directory /b/grok
2022-12-02 06:39:55.916+0000 FINE t1 Statistics.logIt: Finished command [/bin/ctags --list-languages] in directory /b/grok with exit code 0 (took 4 ms)
2022-12-02 06:39:55.916+0000 FINE t1 Executor.exec: Finished command [/bin/ctags --list-languages] in directory /b/grok with exit code 0
2022-12-02 06:39:55.941+0000 INFO t1 Indexer.prepareIndexer: Scanning for repositories in [/b/grok/src/DEV_COMMON_BRANCH] (down to 2 levels below source root)
2022-12-02 06:39:55.966+0000 FINE t29 Executor.exec: Executing command [svn --help] in directory /b/grok
2022-12-02 06:39:55.990+0000 FINE t29 Statistics.logIt: Finished command [svn --help] in directory /b/grok with exit code 0 (took 21 ms)
2022-12-02 06:39:55.991+0000 FINE t29 Executor.exec: Finished command [svn --help] in directory /b/grok with exit code 0
2022-12-02 06:39:55.994+0000 FINE t29 Executor.exec: Executing command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:39:56.008+0000 FINE t29 Statistics.logIt: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 12 ms)
2022-12-02 06:39:56.009+0000 FINE t29 Executor.exec: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:39:56.061+0000 FINE t29 Executor.exec: Executing command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:39:56.074+0000 FINE t29 Statistics.logIt: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 12 ms)
2022-12-02 06:39:56.074+0000 FINE t29 Executor.exec: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:39:56.078+0000 FINE t29 Executor.exec: Executing command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:39:56.091+0000 FINE t29 Statistics.logIt: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 12 ms)
2022-12-02 06:39:56.092+0000 FINE t29 Executor.exec: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:39:56.108+0000 FINE t29 Executor.exec: Executing command [svn log --non-interactive --xml -v -l1 $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:39:56.435+0000 FINE t29 Statistics.logIt: Finished command [svn log --non-interactive --xml -v -l1 $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 326 ms)
2022-12-02 06:39:56.436+0000 FINE t29 Executor.exec: Finished command [svn log --non-interactive --xml -v -l1 $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:39:56.459+0000 CONFIG t29 HistoryGuru.addRepositories: Adding <org.opengrok.indexer.history.SubversionRepository> repository: </b/grok/src/DEV_COMMON_BRANCH>
2022-12-02 06:39:56.461+0000 INFO t1 Statistics.logIt: Done scanning for repositories, found 1 repositories (took 518 ms)
2022-12-02 06:39:56.462+0000 INFO t1 Indexer.prepareIndexer: Generating history cache for all repositories ...
2022-12-02 06:39:56.487+0000 FINE t1 FileHistoryCache.getCachedRevision: not loading latest cached revision file from /b/grok/data/historycache/DEV_COMMON_BRANCH/OpenGroklatestRev
2022-12-02 06:39:56.488+0000 INFO t1 HistoryGuru.createHistoryCacheReal: Creating history cache for 1 repositories
2022-12-02 06:39:56.490+0000 INFO t40 HistoryGuru.createHistoryCache: Creating history cache for /b/grok/src/DEV_COMMON_BRANCH (SubversionRepository) without renamed file handling
2022-12-02 06:39:56.495+0000 FINE t40 Executor.exec: Executing command [svn log --non-interactive --xml -v $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:40:28.834+0000 FINE t40 Statistics.logIt: Finished command [svn log --non-interactive --xml -v $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 32.338 seconds)
2022-12-02 06:40:28.835+0000 FINE t40 Executor.exec: Finished command [svn log --non-interactive --xml -v $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:40:32.679+0000 FINE t40 FileHistoryCache.createDirectoriesForFiles: Starting directory creation for {dir=/b/grok/src/DEV_COMMON_BRANCH,type=Subversion,historyCache=on,renamed=false,merge=false,annotationCache=off} (regular files for history till end of history): 175,069 directories
2022-12-02 06:40:38.343+0000 FINE t40 Statistics.logIt: Done creating directories for {dir=/b/grok/src/DEV_COMMON_BRANCH,type=Subversion,historyCache=on,renamed=false,merge=false,annotationCache=off} (regular files for history till end of history) (took 5.664 seconds)
2022-12-02 06:40:38.343+0000 FINE t40 FileHistoryCache.store: Storing history for 175,069 regular files in repository '{dir=/b/grok/src/DEV_COMMON_BRANCH,type=Subversion,historyCache=on,renamed=false,merge=false,annotationCache=off}' till end of history
2022-12-02 06:41:36.240+0000 FINE t40 FileHistoryCache.store: Stored history for 175,069 regular files in repository '{dir=/b/grok/src/DEV_COMMON_BRANCH,type=Subversion,historyCache=on,renamed=false,merge=false,annotationCache=off}'
2022-12-02 06:41:36.242+0000 FINE t40 Repository.createCache: Done storing history cache for repository /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:41:36.244+0000 INFO t40 Statistics.logIt: Done history cache for /b/grok/src/DEV_COMMON_BRANCH (took 0:01:39)
2022-12-02 06:41:36.245+0000 INFO t1 Statistics.logIt: Done history cache for all repositories (took 0:01:39)
2022-12-02 06:41:36.246+0000 INFO t1 Indexer.prepareIndexer: Done generating history cache
2022-12-02 06:41:36.246+0000 FINE t1 HistoryGuru.invalidateRepositories: invalidating 1 repositories
2022-12-02 06:41:36.252+0000 FINE t99 Executor.exec: Executing command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:41:36.275+0000 FINE t99 Statistics.logIt: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 21 ms)
2022-12-02 06:41:36.276+0000 FINE t99 Executor.exec: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:41:36.284+0000 FINE t99 Executor.exec: Executing command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:41:36.300+0000 FINE t99 Statistics.logIt: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 13 ms)
2022-12-02 06:41:36.301+0000 FINE t99 Executor.exec: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:41:36.304+0000 FINE t99 Executor.exec: Executing command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:41:36.318+0000 FINE t99 Statistics.logIt: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 13 ms)
2022-12-02 06:41:36.320+0000 FINE t99 Executor.exec: Finished command [svn info --xml] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:41:36.325+0000 FINE t99 Executor.exec: Executing command [svn log --non-interactive --xml -v -l1 $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH
2022-12-02 06:41:36.658+0000 FINE t99 Statistics.logIt: Finished command [svn log --non-interactive --xml -v -l1 $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0 (took 333 ms)
2022-12-02 06:41:36.659+0000 FINE t99 Executor.exec: Finished command [svn log --non-interactive --xml -v -l1 $'/b/grok/src/DEV_COMMON_BRANCH@'] in directory /b/grok/src/DEV_COMMON_BRANCH with exit code 0
2022-12-02 06:41:36.670+0000 INFO t1 Statistics.logIt: Done invalidating repositories (1 valid, 1 working) (took 423 ms)
2022-12-02 06:41:36.680+0000 INFO t1 Indexer.doIndexerExecution: Starting indexing
2022-12-02 06:41:36.766+0000 INFO t1 Indexer.doIndexerExecution: Waiting for the executors to finish
2022-12-02 06:41:37.272+0000 INFO t109 IndexDatabase.getIndexDownArgs: Starting file collection using file-system traversal for directory '/DEV_COMMON_BRANCH
2022-12-02 06:41:58.285+0000 INFO t109 Statistics.logIt: Done file collection for directory '/DEV_COMMON_BRANCH' (took 21.11 seconds)
2022-12-02 06:41:58.286+0000 INFO t109 IndexDatabase.update: Starting indexing of directory /DEV_COMMON_BRANCH
2022-12-02 06:41:58.314+0000 FINE t117 DefaultIndexChangedListener.fileAdd: Add: /DEV_COMMON_BRANCH/junos/usr.sbin/eventd/evo/src/evo_eventd_trace.c (CAnalyzer)

vladak Jan 10, 2023
Maintainer

The log looks to be a case of reindex from scratch - the indexer log contains this entry:

not loading latest cached revision file from /b/grok/data/historycache/DEV_COMMON_BRANCH/OpenGroklatestRev

The OpenGroklatestRev file is normally stored at the end of the 1st phase of the indexing, after the indexer is done storing history cache for the repository. This file (which stores the latest revision ID of the repository) is then used in the next round of indexing to actually implement incremental indexing (for repositories that allows this, which is true for Subversion).

I wonder when the indexer reaches the 2nd phase (in the log you can tell this by the appearance of the Starting indexing message) and starts processing individual files, what exactly is under the related historycache directory ? There should be 175,069 files as the indexer logs say. Specifically, do files for which the not getting the history error message appears (like /data/grok/src/RELEASE_THROTTLE/pfe/toolkits/pfe/pfe_if_ce.c) exist at that point ? If yes, are they readable ? Do they exist after the indexer is done ?

sreehari83 Jan 10, 2023
Author

I have not seen that "not getting the history" error message in second phase for any files. but there is no history file crated in history directory.

2022-12-02 06:46:01.909+0000 FINE t147 DefaultIndexChangedListener.fileAdd: Add: /DEV_COMMON_BRANCH/pfe/common/toolkits/pfe/pfe_if_ce.c (CAnalyzer)

vladak Jan 11, 2023
Maintainer

What do you mean by second phase exactly ? Where does the error message mentioned in #4145 (comment) come from ?

vladak Jan 11, 2023
Maintainer

What is exactly in the historycache directory ?

sreehari83 · 2023-01-09T05:47:55Z

sreehari83
Jan 9, 2023
Author

opengrok-1.7.20

we are getting history for all the files.

opengrok-1.7.40

History is not generating for all the files while indexing time.

'/data/grok/src/RELEASE_THROTTLE/pfe/toolkits/pfe/pfe_if_ce.c' in repository {dir=/data/grok/src/RELEASE_THROTTLE,type=Subversion,historyCache=on,renamed=false,merge=false,annotationCache=off} as the it supports history for directories

9 replies

vladak Jan 19, 2023
Maintainer

Also, it would be interesting if you could reindex the same project from scratch with both 1.7.25 and the current version (i.e. wiping the data root before each reindex) and compare the historycache file counts.

vladak Jan 19, 2023
Maintainer

For the record, the not getting the history for ... in repository ... as the it supports history for directories log message was added in 1.7.32, below virtually the same check as in 1.7.25 (modulo the env.isIndexer() however that would not change anything) so the same problem could have happened in 1.7.25 however it was not reported to the log. That's why it is important to actually get the historycache file counts.

sreehari83 Jan 20, 2023
Author

log :

2023-01-20 09:13:57.168+0000 FINE t40 FileHistoryCache.createDirectoriesForFiles: Starting directory creation for {dir=/data/grok/src/pfe,type=Subversion,renamed=false,merge=false} (regular files for history till end of history): 235 directories
2023-01-20 09:13:57.201+0000 INFO t40 Statistics.logIt: Done creating directories for {dir=/data/grok/src/pfe,type=Subversion,renamed=false,merge=false} (regular files for history till end of history) (took {0})
2023-01-20 09:13:57.201+0000 FINE t40 FileHistoryCache.store: Storing history for 235 regular files in repository '{dir=/data/grok/src/pfe,type=Subversion,renamed=false,merge=false}' till end of history
2023-01-20 09:13:57.648+0000 FINE t40 FileHistoryCache.store: Stored history for 235 regular files in repository '{dir=/data/grok/src/pfe,type=Subversion,renamed=false,merge=false}'

History cache using opengrok-1.7.25

:/data/grok/data/historycache/pfe$ find -type f -name '*.gz' | wc -l
231

History cache using opengrok-1.7.24

:/data/grok/data/historycache/pfe$ find -type f -name '*.gz' | wc -l
69497

vladak Jan 20, 2023
Maintainer

Is this indexer log from incremental reindex ? In order to do meaningful comparison, this has to be reindex from scratch. Also, comparing file counts in distinct directories across different version does not really shed more light.

sreehari83 Jan 24, 2023
Author

Both are reindex from scratch

sreehari83 · 2023-01-17T13:34:55Z

sreehari83
Jan 17, 2023
Author

this issue is started from opengrok-1.7.25 .. I'm able to generate history for all files using opengrok-1.7.24

7 replies

vladak Jan 18, 2023
Maintainer

Okay, there is 'fix one case of history cache corruption' in the release logs that might be worth looking into.

vladak Jan 18, 2023
Maintainer

The change in question was done via PR #3828 I believe.

vladak Jan 19, 2023
Maintainer

Thanks for doing the cross checking. The change done to FileHistoryCache#get() in PR #3828 removed the possibility of storing the history cache entry for given file when it was retrieved. This was done only in case the history cache was not up to date or the repository method took longer than some configured value. This change was done to ensure that only the indexer can change the history cache.

Anyhow, this should not affect the outcome of the indexing, at least the currently running one, unless I am missing some interaction. Here's why:

When the indexer (current version) is adding history data to the Lucene document related to the file being processed at the moment, it uses HistoryGuru#getHistory(File):

opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/analysis/AnalyzerGuru.java

Line 640 in ab2563d

if ((history = histGuru.getHistory(file)) != null) {

which will eventually end up in FileHistoryCache#get() if overall history and history cache are enabled which they are in your case given the -H indexer option.

In the case of initial indexing, the removed capability of storing historycache in FileHistoryCache#get() should not matter because the history cache entries should be generated in the first phase of indexing. Before this change, if some history cache entries failed to be generated in the first phase, the FileHistoryCache#get() would fall back to the repository method of retrieving the history and then would store the history cache entries, at the cost of longer indexer run. If the error to generate the history cache entries was persistent, storing the history cache from the previous indexer run would not help in the subsequent indexer runs because the cache entry would be stale in the next run when the file in question has changed.

I think the focus should be on the question why the indexer fails to generate the history cache entries in the first phase. Raising the log level to FINEST might reveal something.

sreehari83 Jan 30, 2023
Author

Thanks for doing the cross checking. The change done to FileHistoryCache#get() in PR #3828 removed the possibility of storing the history cache entry for given file when it was retrieved. This was done only in case the history cache was not up to date or the repository method took longer than some configured value. This change was done to ensure that only the indexer can change the history cache.

Anyhow, this should not affect the outcome of the indexing, at least the currently running one, unless I am missing some interaction. Here's why:

When the indexer (current version) is adding history data to the Lucene document related to the file being processed at the moment, it uses HistoryGuru#getHistory(File):

opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/analysis/AnalyzerGuru.java

Line 640 in ab2563d

if ((history = histGuru.getHistory(file)) != null) {

which will eventually end up in FileHistoryCache#get() if overall history and history cache are enabled which they are in your case given the -H indexer option.

In the case of initial indexing, the removed capability of storing historycache in FileHistoryCache#get() should not matter because the history cache entries should be generated in the first phase of indexing. Before this change, if some history cache entries failed to be generated in the first phase, the FileHistoryCache#get() would fall back to the repository method of retrieving the history and then would store the history cache entries, at the cost of longer indexer run. If the error to generate the history cache entries was persistent, storing the history cache from the previous indexer run would not help in the subsequent indexer runs because the cache entry would be stale in the next run when the file in question has changed.

I think the focus should be on the question why the indexer fails to generate the history cache entries in the first phase. Raising the log level to FINEST might reveal something.

Is there any plan to revert the changes of PR #3828

vladak Apr 27, 2023
Maintainer

Is there any plan to revert the changes of PR #3828

Nope. This removed unnecessary complexity. Also, I am almost always in favor of root causing and addressing the underlying issue, rather than trying to cover it up with a workaround.

sreehari83 · 2023-09-21T06:54:29Z

sreehari83
Sep 21, 2023
Author

is there any update /progress on this issue

1 reply

vladak Sep 25, 2023
Maintainer

Before there can be any progress, the cause of the issue needs to be understood. Specifically, what happens during the initial indexing, i.e. when the historycache directory is still empty.

In the log snippet above there are the following lines:

2022-12-02 06:40:38.343+0000 FINE t40 FileHistoryCache.store: Storing history for 175,069 regular files in repository '{dir=/b/grok/src/DEV_COMMON_BRANCH,type=Subversion,historyCache=on,renamed=false,merge=false,annotationCache=off}' till end of history
2022-12-02 06:41:36.240+0000 FINE t40 FileHistoryCache.store: Stored history for 175,069 regular files in repository '{dir=/b/grok/src/DEV_COMMON_BRANCH,type=Subversion,historyCache=on,renamed=false,merge=false,annotationCache=off}'

Looking at the code of FileHistoryCache#store(), the number reported in the Stored history should match the number of files generated in the historycache directory, assuming the functions that perform the creation of history cache entries (doFileHistory(), storeFile()) properly throw exceptions for all the error cases. Checking these functions, this seems to be the almost always case with one exception that I can see:

opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/FileHistoryCache.java

Lines 300 to 305 in 2f618ed

    
           try { 
        
               cacheFile = getCachedFile(file); 
        
           } catch (CacheException e) { 
        
               LOGGER.log(Level.FINER, e.getMessage()); 
        
               return; 
        
           }

But again, if you run the indexer with FINEST logging, you should be able to better see what is going on.

There is a question whether the indexer should fail the indexing of given project if there is discrepancy between the Storing and Stored counts for any of its repositories.

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History is not generated for all files in a directory #4145

sreehari83 Jan 5, 2023

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