Standard for importing data: brainstorm

[jcolomb]

Can we build one standard for data to import in the lab inventory.
The idea would be to get something working similarly to .ics files for calendar events: something that people selling material will be able to create, and that can be read by different software dealing with lab inventory.

Anyone has an idea?

[bandrow]

I was hoping that Karen would chime in here as I am not the expert. Have you looked at the intermine? There are fly-mines, mouse mines etc. The services are set up by the MODs and are supposed to be uniform. When we did this it took about many people a couple of years of effort, we were doing more than just this and the data was not as well aligned as it should be today.

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On Fri, May 4, 2018 at 12:39 PM, Julien Colomb ***@***.***> wrote: Can we build one standard for data to import in the lab inventory. The idea would be to get something working similarly to .ics files for calendar events: something that people selling material will be able to create, and that can be read by different software dealing with lab inventory. Anyone has an idea? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#13>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFsrNVKZZHVH6hUQqfY66f1OWaECr2Toks5tvK6FgaJpZM4TzKwT> .

-- All key biological entities deserve an #RRID! orcid.org/0000-0002-5497-0243

[jcolomb]

intermine seems not to include data on alleles or insertions, so not usable in this case (if I am right with this)

[jcolomb]

this is quite related to #16, unfortunately the intermine API is apparently not useful in our case.

[bandrow]

It also does not include a lot of strain info from at least vertebrate sources. We had to put together a lot of that data from individual stock centers. Just got a new one for frog this week which was never registered with the MOD before now. I am personally really pleased that we are able to push stock centers toward the nomenclature authorities, of course many work closely with them already.

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On Mon, Oct 8, 2018, 7:24 AM Julien Colomb ***@***.***> wrote: this is quite related to #16 <#16>, unfortunately the intermine API is apparently not useful in our case. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#13 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFsrNXegrqcq3EOfiJMEawSgRf7oC53tks5ui2AvgaJpZM4TzKwT> .