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bulk subdirectory of results missing from telescope rule #1

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hreypar opened this issue Dec 6, 2021 · 0 comments
Open

bulk subdirectory of results missing from telescope rule #1

hreypar opened this issue Dec 6, 2021 · 0 comments

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@hreypar
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hreypar commented Dec 6, 2021

The alignment rule (and previous rules that prepare fastq files) includes a bulk subdirectory within the results path (formally the output of the rule). This makes sense in the star rule because it is used exclusively for bulk-RNA-seq alignments (i.e. the starsolo rule would have a single-cell subdirectory). However the telescope rule needs a wildcard or something in the rule's output to distinguish between the two types of data

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