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ENH: tcksift2 #3668

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ENH: tcksift2 #3668

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shachafy
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@shachafy shachafy commented Aug 28, 2024

List of changes proposed in this PR (pull-request)

An interface for MRTrix's tcksift2 as part of the overall effort to include as many as possible of the tools being used in the neuroimaging society.

Fixes #3666

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codecov bot commented Oct 6, 2024

Codecov Report

Attention: Patch coverage is 88.88889% with 3 lines in your changes missing coverage. Please review.

Project coverage is 70.51%. Comparing base (6ac81ca) to head (a49f154).
Report is 9 commits behind head on master.

Files with missing lines Patch % Lines
nipype/interfaces/mrtrix3/utils.py 78.57% 3 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master    #3668      +/-   ##
==========================================
- Coverage   70.87%   70.51%   -0.37%     
==========================================
  Files        1276     1277       +1     
  Lines       59238    59263      +25     
  Branches     9812     9814       +2     
==========================================
- Hits        41984    41788     -196     
- Misses      16079    16336     +257     
+ Partials     1175     1139      -36     

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Example
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>>> import nipype.interfaces.mrtrix3 as mrt
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For this to work, this needs to be added to

from .utils import (
TCK2VTK,
BrainMask,
ComputeTDI,
DWIExtract,
Generate5tt,
Mesh2PVE,
MRCat,
MRConvert,
MRMath,
MRResize,
MRTransform,
SH2Amp,
SHConv,
TensorMetrics,
TransformFSLConvert,
MaskFilter,
MTNormalise,
Generate5tt2gmwmi,
)

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[ENH] Interface for tcksift2
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