-
Notifications
You must be signed in to change notification settings - Fork 0
/
Durnez_power_main.bbl
195 lines (162 loc) · 7.93 KB
/
Durnez_power_main.bbl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
\begin{thebibliography}{}
\bibitem[Benjamini and Hochberg, 1995]{Benjamini1995}
Benjamini, Y. and Hochberg, Y. (1995).
\newblock {Controlling the false discovery rate: a practical and powerful
approach to multiple testing}.
\newblock {\em Journal of the Royal Statistical Society. Series B, Statistical
methodology}, 57(1):289--300.
\bibitem[Benjamini and Hochberg, 2000]{Benjamini2000}
Benjamini, Y. and Hochberg, Y. (2000).
\newblock {On the Adaptive Control of the False Discovery Rate in Multiple
Testing With Independent Statistics}.
\newblock {\em Journal of Educational and Behavioral Statistics}, 25(1):60--83.
\bibitem[Byrd et~al., 1995]{Byrd1995}
Byrd, R., Lu, P., Nocedal, J., and Zhu, C. (1995).
\newblock {A limited memory algorithm for bound constrained optimization}.
\newblock {\em SIAM Journal on scientific computing}, 16(5):1190--1208.
\bibitem[Cheng and Schwartzman, 2015]{Cheng2015}
Cheng, D. and Schwartzman, A. (2015).
\newblock {On the explicit height distribution and expected number of local
maxima of isotropic Gaussian Random Fields}.
\newblock {\em biorXiv}.
\bibitem[Cohen, 1988]{Cohen1988}
Cohen, J. (1988).
\newblock {\em {Statistical power analysis for the behavioral sciences}}.
\newblock Lawrence Earlbaum Associates, Hilsdale.
\bibitem[Desmond and Glover, 2002]{Desmond2002}
Desmond, J.~E. and Glover, G.~H. (2002).
\newblock {Estimating sample size in functional MRI (fMRI) neuroimaging
studies: statistical power analyses.}
\newblock {\em Journal of neuroscience methods}, 118(2):115--28.
\bibitem[Dudoit et~al., 2003]{Dudoit2003}
Dudoit, S., Shaffer, J.~P., and Block, J.~C. (2003).
\newblock {Multiple Hypothesis Testing in Microarray Experiments}.
\newblock {\em Statistical Science}, 18(1):71--103.
\bibitem[Durnez et~al., 2014]{Durnez2014}
Durnez, J., Moerkerke, B., and Nichols, T.~E. (2014).
\newblock {Post-hoc power estimation for topological inference in fMRI.}
\newblock {\em NeuroImage}, 84:45--64.
\bibitem[Efron, 2007]{efron2007}
Efron, B. (2007).
\newblock {Size, power and false discovery rates}.
\newblock {\em Annals of Statistics}, 35(4):1351--1377.
\bibitem[Eklund et~al., 2016]{Eklund2016}
Eklund, A., Nichols, T.~E., and Knutsson, H. (2016).
\newblock {Cluster failure: Why fMRI inferences for spatial extent have
inflated false-positive rates}.
\newblock {\em Proceedings of the National Academy of Sciences}, page
201602413.
\bibitem[Friston et~al., 2007]{Friston2007}
Friston, K.~J., Ashburner, J., Kiebel, S.~J., Nichols, T.~E., and Penny, W.~D.
(2007).
\newblock {\em {Statistical parametric mapping: the analysis of functional
brain images.}}
\bibitem[Friston et~al., 1999]{Friston1999}
Friston, K.~J., Zarahn, E., Josephs, O., Henson, R.~N., and Dale, a.~M. (1999).
\newblock {Stochastic designs in event-related fMRI.}
\newblock {\em NeuroImage}, 10(5):607--19.
\bibitem[Hayasaka, 2003]{Hayasaka2003}
Hayasaka, S. (2003).
\newblock {Validating cluster size inference: random field and permutation
methods}.
\newblock {\em NeuroImage}, 20(4):2343--2356.
\bibitem[Hayasaka et~al., 2007]{Hayasaka2007}
Hayasaka, S., Peiffer, A.~M., Hugenschmidt, C.~E., and Laurienti, P.~J. (2007).
\newblock {Power and sample size calculation for neuroimaging studies by
non-central random field theory.}
\newblock {\em NeuroImage}, 37(3):721--30.
\bibitem[Henson, 2007]{Henson2007}
Henson, R. (2007).
\newblock {Efficient experimental design for fMRI}.
\newblock In {\em Statistical Parametric Mapping: The Analysis of Functional
Brain Images}, pages 193--210.
\bibitem[Hughett, 2007]{Hughett2007}
Hughett, P. (2007).
\newblock {Accurate Computation of the F-to-z and t-to-z Transforms for Large
Arguments}.
\newblock {\em Journal of Statistical Software}, 23(1):1--5.
\bibitem[Jenkinson et~al., 2012]{Jenkinson2012}
Jenkinson, M., Beckmann, C.~F., Behrens, T. E.~J., Woolrich, M.~W., and Smith,
S.~M. (2012).
\newblock {Fsl.}
\newblock {\em NeuroImage}, 62(2):782--90.
\bibitem[Mumford and Nichols, 2008]{Mumford2008}
Mumford, J.~A. and Nichols, T.~E. (2008).
\newblock {Power calculation for group fMRI studies accounting for arbitrary
design and temporal autocorrelation.}
\newblock {\em NeuroImage}, 39(1):261--8.
\bibitem[Pounds and Cheng, 2004]{Pounds2004}
Pounds, S. and Cheng, C. (2004).
\newblock {Improving false discovery rate estimation.}
\newblock {\em Bioinformatics (Oxford, England)}, 20(11):1737--45.
\bibitem[Pounds and Morris, 2003]{Pounds2003}
Pounds, S. and Morris, S.~W. (2003).
\newblock {Estimating the occurrence of false positives and false negatives in
microarray studies by approximating and partitioning the empirical
distribution of p-values}.
\newblock {\em Bioinformatics}, 19(10):1236--1242.
\bibitem[Roels et~al., 2014]{Roels2014}
Roels, S., Bossier, H., Loeys, T., and Moerkerke, B. (2014).
\newblock {Data-analytical stability of cluster-wise and peak-wise inference in
fMRI data analysis}.
\newblock {\em Journal of Neuroscience Methods}, pages 1--11.
\bibitem[Seurinck et~al., 2011]{Seurinck2011}
Seurinck, R., de~Lange, F.~P., Achten, E., and Vingerhoets, G. (2011).
\newblock {Mental rotation meets the motion aftereffect: the role of hV5/MT+ in
visual mental imagery.}
\newblock {\em Journal of cognitive neuroscience}, 23(6):1395--404.
\bibitem[Silver et~al., 2011]{Silver2011}
Silver, M., Montana, G., and Nichols, T.~E. (2011).
\newblock {False positives in neuroimaging genetics using voxel-based
morphometry data.}
\newblock {\em NeuroImage}, 54(2):992--1000.
\bibitem[Skol et~al., 2006]{Skol2006}
Skol, A.~D., Scott, L.~J., Abecasis, G.~R., and Boehnke, M. (2006).
\newblock {Joint analysis is more efficient than replication-based analysis for
two-stage genome-wide association studies.}
\newblock {\em Nature genetics}, 38(2):209--213.
\bibitem[Smith et~al., 2007]{Smith2007}
Smith, S.~M., Jenkinson, M., Beckmann, C.~F., Miller, K., and Woolrich, M.
(2007).
\newblock {Meaningful design and contrast estimability in FMRI.}
\newblock {\em NeuroImage}, 34(1):127--36.
\bibitem[Storey, 2002]{Storey2001}
Storey, J.~D. (2002).
\newblock {A direct approach to false discovery rates}.
\newblock {\em Journal of the Royal Statistical Society: Series B (Statistical
Methodology)}, 64(3):479--498.
\bibitem[Storey and Tibshirani, 2003]{Storey2003}
Storey, J.~D. and Tibshirani, R. (2003).
\newblock {Statistical significance for genomewide studies.}
\newblock {\em Proceedings of the National Academy of Sciences of the United
States of America}, 100(16):9440--5.
\bibitem[{Van Essen} et~al., 2012]{VanEssen2012}
{Van Essen}, D.~C., Ugurbil, K., Auerbach, E., Barch, D.~M., Behrens, T. E.~J.,
Bucholz, R., Chang, A., Chen, L., Corbetta, M., Curtiss, S.~W., {Della
Penna}, S., Feinberg, D., Glasser, M.~F., Harel, N., Heath, a.~C.,
Larson-Prior, L., Marcus, D., Michalareas, G., Moeller, S., Oostenveld, R.,
Petersen, S.~E., Prior, F., Schlaggar, B.~L., Smith, S.~M., Snyder, a.~Z.,
Xu, J., and Yacoub, E. (2012).
\newblock {The Human Connectome Project: a data acquisition perspective.}
\newblock {\em NeuroImage}, 62(4):2222--31.
\bibitem[{Van Horn} et~al., 1998]{VanHorn1998}
{Van Horn}, J.~D., Ellmore, T.~M., Esposito, G., and Berman, K.~F. (1998).
\newblock {Mapping voxel-based statistical power on parametric images.}
\newblock {\em NeuroImage}, 7(2):97--107.
\bibitem[Wager and Nichols, 2003]{Wager2003}
Wager, T.~D. and Nichols, T.~E. (2003).
\newblock {Optimization of experimental design in fMRI: a general framework
using a genetic algorithm}.
\newblock {\em NeuroImage}, 18(2):293--309.
\bibitem[Woo et~al., 2014]{Woo2014}
Woo, C.-W., Krishnan, A., and Wager, T.~D. (2014).
\newblock {Cluster-extent based thresholding in fMRI analyses: pitfalls and
recommendations.}
\newblock {\em NeuroImage}, 91:412--9.
\bibitem[Worsley, 2007]{Worsley2007}
Worsley, K.~J. (2007).
\newblock {Random Field Theory}.
\newblock In Friston, K., Ashburner, J., Kiebel, S.~J., Nichols, T.~E., and
Penny, W., editors, {\em Statistical Parametric Mapping}, chapter Random Fie,
pages 232--236. Academic Press, London.
\end{thebibliography}