Enable "-k" option for nucmer

[jacorvar]

Hi,

would it be possible to enable the -k option for nucmer too?
One of my contigs displays several short alignments to different chromosomes of the reference (probably false positives or repeats). It also shows a couple of long alignments to one chromosome. However, many short alignments overlap (on the contig sequence) with the long ones. That's why I'd like to remove the short ones with the "-k" option, or at least filter them according to alignment length and not similarity (I might have 1000 50bp-alignments with 99% identity, so it wouldn't work).

Is there a way to do this when using nucmer and show-coords?

Thanks