requirements.txt

#
# This file is autogenerated by pip-compile with Python 3.10
# by the following command:
#
#    pip-compile requirements.in
#
absl-py==2.0.0
    # via
    #   tensorboard
    #   tensorflow
alembic==1.12.1
    # via optuna
astunparse==1.6.3
    # via tensorflow
cachetools==5.3.2
    # via
    #   google-auth
    #   zetastitcher
certifi==2023.11.17
    # via requests
charset-normalizer==3.3.2
    # via requests
clarabel==0.6.0
    # via cvxpy
cloudpickle==3.0.0
    # via hyperopt
coloredlogs==15.0.1
    # via zetastitcher
colorlog==6.7.0
    # via optuna
contourpy==1.1.0
    # via matplotlib
cupy-cuda11x[all]==12.2.0
    # via -r requirements.in
cvxpy==1.4.1
    # via zetastitcher
cycler==0.12.1
    # via matplotlib
cython==0.29.36
    # via cupy-cuda11x
daqp==0.5.1
    # via qpsolvers
ecos==2.0.12
    # via
    #   cvxpy
    #   qpsolvers
fastrlock==0.8.2
    # via cupy-cuda11x
flatbuffers==23.5.26
    # via tensorflow
fonttools==4.45.1
    # via matplotlib
future==0.18.3
    # via hyperopt
gast==0.4.0
    # via tensorflow
google-auth==2.23.4
    # via
    #   google-auth-oauthlib
    #   tensorboard
google-auth-oauthlib==0.4.6
    # via tensorboard
google-pasta==0.2.0
    # via tensorflow
greenlet==3.0.1
    # via sqlalchemy
grpcio==1.59.3
    # via
    #   tensorboard
    #   tensorflow
h5py==3.10.0
    # via tensorflow
humanfriendly==10.0
    # via coloredlogs
humanize==4.9.0
    # via zetastitcher
hyperopt==0.2.7
    # via -r requirements.in
idna==3.6
    # via requests
imageio==2.33.0
    # via
    #   pims
    #   scikit-image
    #   zetastitcher
joblib==1.3.2
    # via
    #   -r requirements.in
    #   scikit-learn
keras==2.11.0
    # via tensorflow
kiwisolver==1.4.5
    # via matplotlib
lazy-loader==0.3
    # via scikit-image
libclang==16.0.6
    # via tensorflow
lmdb==1.4.1
    # via -r requirements.in
mako==1.3.0
    # via alembic
markdown==3.5.1
    # via tensorboard
markupsafe==2.1.3
    # via
    #   mako
    #   werkzeug
matplotlib==3.7.4
    # via -r requirements.in
networkx==3.1
    # via
    #   -r requirements.in
    #   hyperopt
    #   scikit-image
    #   zetastitcher
numpy==1.24.4
    # via
    #   clarabel
    #   contourpy
    #   cupy-cuda11x
    #   cvxpy
    #   ecos
    #   h5py
    #   hyperopt
    #   imageio
    #   matplotlib
    #   opencv-python
    #   opt-einsum
    #   optuna
    #   osqp
    #   pandas
    #   pims
    #   qdldl
    #   qpsolvers
    #   scikit-image
    #   scikit-learn
    #   scipy
    #   scs
    #   tensorboard
    #   tensorflow
    #   tifffile
    #   zetastitcher
oauthlib==3.2.2
    # via requests-oauthlib
opencv-python==4.8.1.78
    # via zetastitcher
opt-einsum==3.3.0
    # via tensorflow
optuna==3.4.0
    # via cupy-cuda11x
osqp==0.6.3
    # via
    #   cvxpy
    #   qpsolvers
packaging==23.2
    # via
    #   matplotlib
    #   optuna
    #   scikit-image
    #   tensorflow
pandas==2.1.3
    # via
    #   -r requirements.in
    #   zetastitcher
pillow==10.1.0
    # via
    #   imageio
    #   matplotlib
    #   scikit-image
pims==0.6.1
    # via zetastitcher
protobuf==3.19.6
    # via
    #   tensorboard
    #   tensorflow
psutil==5.9.6
    # via zetastitcher
py4j==0.10.9.7
    # via hyperopt
pyasn1==0.5.1
    # via
    #   pyasn1-modules
    #   rsa
pyasn1-modules==0.3.0
    # via google-auth
pybind11==2.11.1
    # via cvxpy
pyparsing==3.1.1
    # via matplotlib
python-dateutil==2.8.2
    # via
    #   matplotlib
    #   pandas
pytz==2023.3.post1
    # via pandas
pyyaml==6.0.1
    # via
    #   optuna
    #   zetastitcher
qdldl==0.1.7.post0
    # via osqp
qpsolvers==4.0.1
    # via zetastitcher
requests==2.31.0
    # via
    #   requests-oauthlib
    #   tensorboard
requests-oauthlib==1.3.1
    # via google-auth-oauthlib
rsa==4.9
    # via google-auth
scikit-image==0.22.0
    # via -r requirements.in
scikit-learn==1.3.2
    # via -r requirements.in
scipy==1.11.4
    # via
    #   -r requirements.in
    #   clarabel
    #   cupy-cuda11x
    #   cvxpy
    #   ecos
    #   hyperopt
    #   osqp
    #   qdldl
    #   qpsolvers
    #   scikit-image
    #   scikit-learn
    #   scs
    #   zetastitcher
scs==3.2.4.post1
    # via
    #   cvxpy
    #   qpsolvers
simpleitk==2.3.1
    # via -r requirements.in
six==1.16.0
    # via
    #   astunparse
    #   google-pasta
    #   hyperopt
    #   python-dateutil
    #   tensorflow
slicerator==1.1.0
    # via pims
sqlalchemy==2.0.23
    # via
    #   alembic
    #   optuna
tensorboard==2.11.2
    # via tensorflow
tensorboard-data-server==0.6.1
    # via tensorboard
tensorboard-plugin-wit==1.8.1
    # via tensorboard
tensorflow==2.11.0
    # via -r requirements.in
tensorflow-estimator==2.11.0
    # via tensorflow
tensorflow-io-gcs-filesystem==0.34.0
    # via tensorflow
termcolor==2.3.0
    # via tensorflow
threadpoolctl==3.2.0
    # via scikit-learn
tifffile==2023.9.26
    # via
    #   scikit-image
    #   zetastitcher
tqdm==4.66.1
    # via
    #   hyperopt
    #   optuna
typing-extensions==4.8.0
    # via
    #   alembic
    #   sqlalchemy
    #   tensorflow
tzdata==2023.3
    # via pandas
urllib3==2.1.0
    # via requests
werkzeug==3.0.1
    # via tensorboard
wheel==0.42.0
    # via
    #   astunparse
    #   tensorboard
wrapt==1.16.0
    # via tensorflow
zetastitcher==0.7.0.post1
    # via -r requirements.in

# The following packages are considered to be unsafe in a requirements file:
# setuptools