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New genome and annotations for Phaseolus coccineus #194

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7 of 14 tasks
StevenCannon-USDA opened this issue Feb 13, 2024 · 2 comments
Open
7 of 14 tasks

New genome and annotations for Phaseolus coccineus #194

StevenCannon-USDA opened this issue Feb 13, 2024 · 2 comments

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@StevenCannon-USDA
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StevenCannon-USDA commented Feb 13, 2024

Main steps for adding new genome and annotation collections

Genus/species/collection names:

  • Phaseolus/coccineus/genomes/PHA8298.gnm1.PYJ1

  • Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14

  • Add collection(s) to the Data Store, including commits to datastore-metadata (2024-02-13: at annex)

  • Validate the README(s)

  • Update about_this_collection.yml

  • Calculate AHRD functional annotations

  • Calculate gene family assignments (.gfa)

  • Add to pan-gene set

  • Load relevant mine

  • Add BLAST targets

  • Incorporate into GCV

  • Update the jekyll collections listing

  • Update browser configs

  • run BUSCO

  • Update DSCensor

  • Add LINKOUTS to datastore, refresh linkout service

@adf-ncgr
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Contributor

@StevenCannon-USDA AHRD/BUSCO/GFA bits completed, let me know if you think this collection is ready to move out of the annex then will proceed with subsequent steps.

@StevenCannon-USDA
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Looks good to me! I don't think of reasons to delay for this one.

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