From 5ef4b3892495fa9366f8441b3b3d00b21c389e57 Mon Sep 17 00:00:00 2001 From: Connor Cameron Date: Tue, 22 Aug 2023 12:56:32 -0600 Subject: [PATCH] Update process_collections.py Hotfix fstring error --- scripts/process_collections.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/process_collections.py b/scripts/process_collections.py index 893d06a..888acd8 100644 --- a/scripts/process_collections.py +++ b/scripts/process_collections.py @@ -183,7 +183,7 @@ def process_collections(self, cmds_only, mode): "bam_url", None ) if bam_url: - cmd += f";jbrowse add-track -n {'x'.join(parent) BAM} -a {parent[1]} --indexFile {bam_url}.bai {bam_url} --force" # add BAM alignment track for genome_alignments + cmd += f';jbrowse add-track -n "{"x".join(parent)} BAM" -a {parent[1]} --indexFile {bam_url}.bai {bam_url} --force' # add BAM alignment track for genome_alignments elif mode == "blast": # for blast continue # Not blastable at the moment # MORE CANONICAL TYPES HERE