Kustomize file is changed on cluster-sync

[oshoval]

What happened:
Perform cluster-sync locally and see the config/manager/kustomization.yaml file is changed.
It isn't good because it makes us have an unstaged file that makes working with git locally
less convenient.

What you expected to happen:
We should find a solution that doesnt alter files (at least not tracked ones) when we cluster-sync locally.

How to reproduce it (as minimally and precisely as possible):
Just run cluster-sync locally and see git status.

Additional context:

Environment:

• KubeVirt version (use virtctl version): N/A
• Kubernetes version (use kubectl version): N/A
• VM or VMI specifications: N/A
• Cloud provider or hardware configuration: N/A
• OS (e.g. from /etc/os-release): N/A
• Kernel (e.g. uname -a): N/A
• Install tools: N/A
• Others: N/A