A tutorial for the modfinder module of BioJava
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The modfinder module of BioJava provides an API for identification of protein pre-, co-, and post-translational modifications from structures. |
This tutorial is split into several chapters.
Chapter 1 - Quick Installation
Chapter 2 - How to get the list of supported protein modifications
Chapter 3 - How to identify protein modifications in a structure
Chapter 4 - How to define a new protein modification
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank
Jianjiong Gao; Andreas Prlic; Chunxiao Bi; Wolfgang F. Bluhm; Dimitris Dimitropoulos; Dong Xu; Philip E. Bourne; Peter W. Rose
Bioinformatics. 2017 Feb 17.
BioJava: an open-source framework for bioinformatics in 2012
Andreas Prlic; Andrew Yates; Spencer E. Bliven; Peter W. Rose; Julius Jacobsen; Peter V. Troshin; Mark Chapman; Jianjiong Gao; Chuan Hock Koh; Sylvain Foisy; Richard Holland; Gediminas Rimsa; Michael L. Heuer; H. Brandstatter-Muller; Philip E. Bourne; Scooter Willis
Bioinformatics (2012) 28 (20): 2693-2695.
The content of this tutorial is available under the CC-BY license.
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