[Question] Process for converting JSON response from metadata/user endpoint to JSON-LD in Bioschema format for FAIRsoft evaluator

[abnerbog]

Question:
What is the process used for converting the JSON output from the metadata/user endpoint in the Metadata Extractor into a JSON-LD file in Bioschema format that can be used as input in the FAIRsoft evaluator?

Description and Context:
I am investigating programmatically using the FAIRsoft evaluator and would like to understand the specific steps or logic used to transform JSON output into a compliant JSON-LD file that adheres to the Bioschema format. Understanding this process will help ensure my integration of metadata follows best practices and is aligned with the tool’s intended usage.

Attempts:
I have reviewed this repository and also explored the Node-API repository on GitLab for any relevant endpoints or code that handles this conversion but have not yet found a detailed explanation or working solution.

Additional Context:
Any specific code references, guidelines, or examples of converting the JSON output from the metadata/user endpoint to JSON-LD and then inputting this in the FAIRsoft evaluator would be very helpful.

[EvaMart]

Hi Abner,

The code responsible for the conversion is here: makejson.py. It performs a mapping of attributes for the conversion.

As for an endpoint, the front end currently uses POST /tools/jsonld (see code). This endpoint expects metadata in a slightly different format than '/metadata/user', due to additional indexing on the front end.

If you need to convert metadata to maSMP (which includes properties from schema.org, Bioschemas, etc.) programmatically, I can easily adapt the /tools/jsonld endpoint by adding a parameter to handle this.