Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use pyinvoke and Fabric #36

Open
jmfernandez opened this issue Feb 8, 2023 · 0 comments
Open

Use pyinvoke and Fabric #36

jmfernandez opened this issue Feb 8, 2023 · 0 comments
Milestone

Comments

@jmfernandez
Copy link
Member

Next example shows how to issue commands which can be either remotely or locally run https://stackoverflow.com/a/55704170 based on both pyinvoke and Fabric libraries.

Past the 1.0 milestone, WfExS-backend is going to gain different non-raw execution scenarios, like in-container runs, runs with different users, remote runs through ssh, remote runs through a queue system (first, monolithic, later, spread) and remote runs through GA4GH TES and WES.

A way to seamless integrate this is first transitioning to use both pyinvoke and Fabric, so local and ssh executions are seamless integrated, and then trying to extend it to the other execution environments.

@jmfernandez jmfernandez added this to the 2.x milestone Sep 23, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant