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nixtla_ets.py
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nixtla_ets.py
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"""AutoETS for TimeSeries Forecasting
Uses AutoETS implemented in https://github.com/Nixtla/statsforecast
Current limitations:
(1) No handling for prediction "gap"
(2) Enable user to pass in seasonality length to run AutoETS with seasonality. NOTE: The seasonality will be infered based on the temporal column.
"""
import importlib
import datatable as dt
import numpy as np
from h2oaicore.models import CustomTimeSeriesModel
from h2oaicore.systemutils import (
make_experiment_logger,
loggerinfo,
loggerwarning,
loggerdebug,
)
from h2oaicore.systemutils import (
small_job_pool,
save_obj,
load_obj,
user_dir,
remove,
config,
max_threads,
)
from h2oaicore.systemutils_more import arch_type
import os
import pandas as pd
import shutil
import random
import uuid
from sklearn.preprocessing import LabelEncoder, MinMaxScaler
FREQS = {"MS": 12, "M": 12, "D": 7, "Q": 4, "QS": 4, "H": 24}
class suppress_stdout_stderr(object):
def __init__(self):
self.null_fds = [os.open(os.devnull, os.O_RDWR) for x in range(2)]
self.save_fds = [os.dup(1), os.dup(2)]
def __enter__(self):
os.dup2(self.null_fds[0], 1)
os.dup2(self.null_fds[1], 2)
def __exit__(self, *_):
os.dup2(self.save_fds[0], 1)
os.dup2(self.save_fds[1], 2)
for fd in self.null_fds + self.save_fds:
os.close(fd)
# Parallel implementation requires methods being called from different processes
# Global methods support this feature
# We use global methods as a wrapper for member methods of the transformer
def MyParallelAutoETSTransformer_fit_async(*args, **kwargs):
return AutoETSParallelModel._fit_async(*args, **kwargs)
def MyParallelAutoETSTransformer_transform_async(*args, **kwargs):
return AutoETSParallelModel._transform_async(*args, **kwargs)
class AutoETSParallelModel(CustomTimeSeriesModel):
_regression = True
_binary = False
_multiclass = False
_display_name = "Auto_ETS_Parallel"
_description = "Auto ETS TimeSeries forecasting with multi process support"
_parallel_task = True
_testing_can_skip_failure = False # ensure tested as if shouldn't fail
_modules_needed_by_name = ['statsforecast==1.7.4']
@staticmethod
def is_enabled():
return not (arch_type == "ppc64le")
@staticmethod
def can_use(accuracy, interpretability, **kwargs):
return True # by default too slow unless only enabled
@staticmethod
def do_acceptance_test():
return True
def set_default_params(
self, accuracy=None, time_tolerance=None, interpretability=None, **kwargs
):
#only main parameter to set by user is the seasonality period for ETS.
#if not set defaults to non-seasonal ETS
self.params = dict(
season_length=kwargs.get("season_length", 1)
)
def mutate_params(self, accuracy, time_tolerance, interpretability, **kwargs):
# No mutation required for any parameters for AutoETS
pass
@staticmethod
def _get_n_jobs(logger, **kwargs):
if "n_jobs_ets" in config.recipe_dict:
return min(config.recipe_dict["n_jobs_ets"], max_threads())
try:
if config.fixed_num_folds <= 0:
n_jobs = max(
1,
int(
int(
max_threads() / min(config.num_folds, kwargs["max_workers"])
)
),
)
else:
n_jobs = max(
1,
int(
int(
max_threads()
/ min(
config.fixed_num_folds,
config.num_folds,
kwargs["max_workers"],
)
)
),
)
except KeyError:
loggerinfo(logger, "autoets No Max Worker in kwargs. Set n_jobs to 1")
n_jobs = 1
return n_jobs if n_jobs > 1 else 1
def _clean_tmp_folder(self, logger, tmp_folder):
try:
shutil.rmtree(tmp_folder)
loggerinfo(logger, "autoets cleaned up temporary file folder.")
except:
loggerwarning(
logger, "autoets could not delete the temporary file folder."
)
def _create_tmp_folder(self, logger):
# Create a temp folder to store files used during multi processing experiment
# This temp folder will be removed at the end of the process
# Set the default value without context available (required to pass acceptance test
tmp_folder = os.path.join(
user_dir(), "%s_autoets_model_folder" % uuid.uuid4()
)
# Make a real tmp folder when experiment is available
if self.context and self.context.experiment_id:
tmp_folder = os.path.join(
self.context.experiment_tmp_dir,
"%s_autoets_model_folder" % uuid.uuid4(),
)
# Now let's try to create that folder
try:
os.mkdir(tmp_folder)
except PermissionError:
# This should not occur so log a warning
loggerwarning(logger, "autoets was denied temp folder creation rights")
tmp_folder = os.path.join(
user_dir(), "%s_autoets_model_folder" % uuid.uuid4()
)
os.mkdir(tmp_folder)
except FileExistsError:
# We should never be here since temp dir name is expected to be unique
loggerwarning(logger, "autoets temp folder already exists")
tmp_folder = os.path.join(
self.context.experiment_tmp_dir,
"%s_autoets_model_folder" % uuid.uuid4(),
)
os.mkdir(tmp_folder)
except:
# Revert to temporary file path
tmp_folder = os.path.join(
user_dir(), "%s_autoets_model_folder" % uuid.uuid4()
)
os.mkdir(tmp_folder)
loggerinfo(logger, "autoets temp folder {}".format(tmp_folder))
return tmp_folder
@staticmethod
def _fit_async(X_path, grp_hash, tmp_folder, exogenous_vars, params): #, cap):
"""
Fits a autoets model for a particular time group
:param X_path: Path to the data used to fit the autoets model
:param grp_hash: Time group identifier
:exogenous_vars: column names of additional predictors, AutoETS does not use them
:return: time group identifier and path to the pickled model
"""
np.random.seed(1234)
random.seed(1234)
X = load_obj(X_path)
# Commented for performance, uncomment for debug
# print("autoets - fitting on data of shape: %s for group: %s" % (str(X.shape), grp_hash))
#if X.shape[0] < 20:
# return grp_hash, None
# Import autoets model
mod = importlib.import_module("statsforecast.models")
model = mod.AutoETS(season_length = params["season_length"])
with suppress_stdout_stderr():
try:
model.fit(X['y'].values)
except:
model = None # model fit failed for AutoETS
model_path = os.path.join(tmp_folder, "autoets_model" + str(uuid.uuid4()))
save_obj(model, model_path)
remove(X_path) # remove to indicate success
return grp_hash, model_path
def get_hash(self, key):
# Create dict key to store the min max scaler
if isinstance(key, tuple):
key = list(key)
elif isinstance(key, list):
pass
else:
# Not tuple, not list
key = [key]
grp_hash = "_".join(map(str, key))
return grp_hash
def fit(
self,
X,
y,
sample_weight=None,
eval_set=None,
sample_weight_eval_set=None,
**kwargs,
):
# Get TGC and time column
self.tgc = self.params_base.get("tgc", None)
self.time_column = self.params_base.get("time_column", None)
self.nan_value = np.mean(y)
self.prior = np.mean(y)
if self.time_column is None:
self.time_column = self.tgc[0]
# Get the logger if it exists
logger = None
if self.context and self.context.experiment_id:
logger = make_experiment_logger(
experiment_id=self.context.experiment_id,
tmp_dir=self.context.tmp_dir,
experiment_tmp_dir=self.context.experiment_tmp_dir,
)
loggerinfo(
logger, "Start Fitting autoets Model with params : {}".format(self.params)
)
try:
# Add value of autoets_top_n in recipe_dict variable inside of config.toml file
# eg1: recipe_dict="{'autoets_top_n': 200}"
# eg2: recipe_dict="{'autoets_top_n':10}"
self.top_n = config.recipe_dict["autoets_top_n"]
except KeyError:
self.top_n = 50
loggerinfo(
logger,
f"autoets will use {self.top_n} groups as well as average target data.",
)
# Get temporary folders for multi process communication
tmp_folder = self._create_tmp_folder(logger)
n_jobs = self._get_n_jobs(logger, **kwargs)
tgc_wo_time = list(np.setdiff1d(self.tgc, self.time_column))
X = X.to_pandas()
#collect the column names of the non TGC columns used as predictors
exogenous_vars = list( np.setdiff1d(X.columns, self.tgc + [self.time_column] ) )
# Fill NaNs or None
X = X.replace([None, np.nan], 0)
# Add target, Label encoder is only used for Classif. which we don't support...
if self.labels is not None:
y = LabelEncoder().fit(self.labels).transform(y)
X["y"] = np.array(y)
self.nan_value = X["y"].mean()
# Change date feature name to match autoets requirements
X.rename(columns={self.time_column: "ds"}, inplace=True)
#Sort the X dataframe expects target values to be in sorted order
if len(tgc_wo_time) > 0:
cols_to_sort = tgc_wo_time + ["ds"]
else:
cols_to_sort = ["ds"]
X.sort_values(cols_to_sort, inplace=True, ignore_index = True)
# transform to datetime to try to infer the frequency
X["ds"] = pd.to_datetime(X["ds"])
infered_freq = pd.infer_freq(X["ds"].iloc[:5])
if infered_freq is not None:
# update season length
self.params["season_length"] = FREQS.get(infered_freq, 1)
loggerinfo(
logger, "Updated season_length based on inference"
)
# Create a general scale now that will be used for unknown groups at prediction time
# Can we do smarter than that ?
general_scaler = MinMaxScaler().fit(
X[["y", "ds"]].groupby("ds").median().values
)
# Go through groups and standard scale them
if len(tgc_wo_time) > 0:
X_groups = X.groupby(tgc_wo_time)
else:
X_groups = [([None], X)]
scalers = {}
scaled_ys = []
print("Number of groups : ", len(X_groups))
for g in tgc_wo_time:
print(f"Number of groups in {g} groups : {X[g].unique().shape}") #improve message >>>>>>
for key, X_grp in X_groups:
# Create dict key to store the min max scaler
grp_hash = self.get_hash(key)
# Scale target for current group
scalers[grp_hash] = MinMaxScaler()
y_skl = scalers[grp_hash].fit_transform(X_grp[["y"]].values)
# Put back in a DataFrame to keep track of original index
y_skl_df = pd.DataFrame(y_skl, columns=["y"])
y_skl_df.index = X_grp.index
scaled_ys.append(y_skl_df)
# Set target back in original frame but keep original
X["y_orig"] = X["y"]
X["y"] = pd.concat(tuple(scaled_ys), axis=0)
# Now Average groups
X_avg = X[["ds", "y"]].groupby("ds").mean().reset_index()
# Send that to autoets
mod = importlib.import_module("statsforecast.models")
model = mod.AutoETS(season_length=self.params["season_length"])
with suppress_stdout_stderr():
try:
model.fit(X_avg['y'].values) #AutoETS accepts only numpy arrays
except:
#try a fallback model i.e. SeasonalNaive
model = mod.SeasonalNaive(season_length=self.params["season_length"])
model.fit(X_avg['y'].values)
top_groups = None
if len(tgc_wo_time) > 0:
if self.top_n > 0:
top_n_grp = (
X.groupby(tgc_wo_time)
.size()
.sort_values()
.reset_index()[tgc_wo_time]
.iloc[-self.top_n:]
.values
)
top_groups = ["_".join(map(str, key)) for key in top_n_grp]
grp_models = {}
priors = {}
if top_groups:
# Prepare for multi processing
num_tasks = len(top_groups)
def processor(out, res):
out[res[0]] = res[1]
pool_to_use = small_job_pool
loggerinfo(logger, f"autoets will use {n_jobs} workers for fitting.")
pool = pool_to_use(
logger=None,
processor=processor,
num_tasks=num_tasks,
max_workers=n_jobs,
)
# Fit 1 autoets model per time group column
nb_groups = len(X_groups)
# Put y back to its unscaled value for top groups
X["y"] = X["y_orig"]
for _i_g, (key, X) in enumerate(X_groups):
# Just log where we are in the fitting process
if (_i_g + 1) % max(1, nb_groups // 20) == 0:
loggerinfo(
logger,
"autoets : %d%% of groups fitted"
% (100 * (_i_g + 1) // nb_groups),
)
grp_hash = self.get_hash(key)
if grp_hash not in top_groups:
continue
X_path = os.path.join(tmp_folder, "autoets" + str(uuid.uuid4()))
X = X.reset_index(drop=True)
save_obj(X, X_path)
priors[grp_hash] = X["y"].mean()
args = (X_path, grp_hash, tmp_folder, exogenous_vars, self.params)
kwargs = {}
pool.submit_tryget(
None,
MyParallelAutoETSTransformer_fit_async,
args=args,
kwargs=kwargs,
out=grp_models,
)
pool.finish()
for k, v in grp_models.items():
grp_models[k] = load_obj(v) if v is not None else None
remove(v)
self._clean_tmp_folder(logger, tmp_folder)
self.set_model_properties(
model={
"avg": model,
"group": grp_models,
"priors": priors,
"topgroups": top_groups,
"skl": scalers,
"gen_scaler": general_scaler,
"exogenous_vars" : exogenous_vars
},
features=self.tgc + exogenous_vars,
importances=np.ones(len(self.tgc + exogenous_vars)),
iterations=-1, # Does not have iterations
)
return None
@staticmethod
def _transform_async(model_path, X_path, nan_value, exogenous_vars, tmp_folder):
"""
Predicts target for a particular time group
:param model_path: path to the stored model
:param X_path: Path to the data used to fit the autoets model
:param nan_value: Value of target prior, used when no fitted model has been found
:return: self
"""
model = load_obj(model_path)
XX_path = os.path.join(tmp_folder, "autoets_XXt" + str(uuid.uuid4()))
X = load_obj(X_path)
# autoets returns the predictions ordered by time
# So we should keep track of the time order for each group so that
# predictions are ordered the same as the imput frame
# Keep track of the order
order = np.argsort(pd.to_datetime(X["ds"]))
if model is not None:
try:
# Run AutoETS
yhat = model.predict(h = X.shape[0])['mean']
XX = pd.DataFrame(yhat, columns=["yhat"])
except:
XX = pd.DataFrame(
np.full((X.shape[0], 1), nan_value), columns=["yhat"]
) # AutoETS generated error while predicting
else:
XX = pd.DataFrame(
np.full((X.shape[0], 1), nan_value), columns=["yhat"]
) # invalid models
XX.index = X.index[order]
assert XX.shape[1] == 1
save_obj(XX, XX_path)
remove(model_path) # indicates success, no longer need
remove(X_path) # indicates success, no longer need
return XX_path
def predict(self, X: dt.Frame, **kwargs):
"""
Uses fitted models (1 per time group) to predict the target
:param X: Datatable Frame containing the features
:return: autoets predictions
"""
# Get the logger if it exists
logger = None
if self.context and self.context.experiment_id:
logger = make_experiment_logger(
experiment_id=self.context.experiment_id,
tmp_dir=self.context.tmp_dir,
experiment_tmp_dir=self.context.experiment_tmp_dir,
)
if self.tgc is None or not all([x in X.names for x in self.tgc]):
loggerdebug(logger, "Return 0 predictions")
return np.ones(X.shape[0]) * self.nan_value
models, _, _, _ = self.get_model_properties()
avg_model = models["avg"]
grp_models = models["group"]
priors = models["priors"]
top_groups = models["topgroups"]
scalers = models["skl"]
general_scaler = models["gen_scaler"]
exogenous_vars = models["exogenous_vars"]
tmp_folder = self._create_tmp_folder(logger)
n_jobs = self._get_n_jobs(logger, **kwargs)
tgc_wo_time = list(np.setdiff1d(self.tgc, self.time_column))
X = X.to_pandas()
# Fill NaNs or None
X = X.replace([None, np.nan], 0)
# Change date feature name to match autoets requirements
X.rename(columns={self.time_column: "ds"}, inplace=True)
# Predict y using unique dates
X_time = X[["ds"]].groupby("ds").first().reset_index()
with suppress_stdout_stderr():
y_avg = avg_model.predict(h = X_time.shape[0])['mean']
### AutoETS returns the results in sorted time order so allow for that
X_time.sort_values("ds", inplace=True)
X_time["yhat"] = y_avg
X_time.sort_index(inplace=True)
# Merge back into original frame on 'ds'
# pd.merge wipes the index ... so keep it to provide it again
indices = X.index
X = pd.merge(left=X, right=X_time[["ds", "yhat"]], on="ds", how="left")
X.index = indices
# Go through groups and recover the scaled target for knowed groups
if len(tgc_wo_time) > 0:
X_groups = X.groupby(tgc_wo_time)
else:
X_groups = [([None], X)]
inverted_ys = []
for key, X_grp in X_groups:
grp_hash = self.get_hash(key)
# Scale target for current group
if grp_hash in scalers.keys():
inverted_y = scalers[grp_hash].inverse_transform(X_grp[["yhat"]])
else:
inverted_y = general_scaler.inverse_transform(X_grp[["yhat"]])
# Put back in a DataFrame to keep track of original index
inverted_df = pd.DataFrame(inverted_y, columns=["yhat"])
inverted_df.index = X_grp.index
inverted_ys.append(inverted_df)
XX_general = pd.concat(tuple(inverted_ys), axis=0).sort_index()
if top_groups:
# Go though the groups and predict only top
XX_paths = []
model_paths = []
def processor(out, res):
out.append(res)
num_tasks = len(top_groups)
pool_to_use = small_job_pool
pool = pool_to_use(
logger=None,
processor=processor,
num_tasks=num_tasks,
max_workers=n_jobs,
)
nb_groups = len(X_groups)
for _i_g, (key, X_grp) in enumerate(X_groups):
# Just log where we are in the fitting process
if (_i_g + 1) % max(1, nb_groups // 20) == 0:
loggerinfo(
logger,
"autoets : %d%% of groups predicted"
% (100 * (_i_g + 1) // nb_groups),
)
# Create dict key to store the min max scaler
grp_hash = self.get_hash(key)
X_path = os.path.join(tmp_folder, "autoets_Xt" + str(uuid.uuid4()))
if grp_hash not in top_groups:
XX = pd.DataFrame(
np.full((X_grp.shape[0], 1), np.nan), columns=["yhat"]
) # unseen groups
XX.index = X_grp.index
save_obj(XX, X_path)
XX_paths.append(X_path)
continue
if grp_models[grp_hash] is None:
XX = pd.DataFrame(
np.full((X_grp.shape[0], 1), np.nan), columns=["yhat"]
) # unseen groups
XX.index = X_grp.index
save_obj(XX, X_path)
XX_paths.append(X_path)
continue
model = grp_models[grp_hash]
model_path = os.path.join(
tmp_folder, "autoets_modelt" + str(uuid.uuid4())
)
save_obj(model, model_path)
save_obj(X_grp, X_path)
model_paths.append(model_path)
args = (model_path, X_path, priors[grp_hash], exogenous_vars, tmp_folder)
kwargs = {}
pool.submit_tryget(
None,
MyParallelAutoETSTransformer_transform_async,
args=args,
kwargs=kwargs,
out=XX_paths,
)
pool.finish()
XX_top_groups = pd.concat(
(load_obj(XX_path) for XX_path in XX_paths), axis=0
).sort_index()
for p in XX_paths + model_paths:
remove(p)
self._clean_tmp_folder(logger, tmp_folder)
features_df = pd.DataFrame()
features_df["GrpAvg"] = XX_general["yhat"]
if top_groups:
features_df[f"_Top{self.top_n}Grp"] = XX_top_groups["yhat"]
features_df.loc[
features_df[f"_Top{self.top_n}Grp"].notnull(), "GrpAvg"
] = features_df.loc[
features_df[f"_Top{self.top_n}Grp"].notnull(), f"_Top{self.top_n}Grp"
]
# Models have to return a numpy array
return features_df["GrpAvg"].values