root/unknown annotations are not displayed

[krchristie]

@LiNiMGI noticed that "unknown" annotations to the root nodes are not being displayed and thus cannot be deleted or edited.

I can replicate this. Here is our example for mouse Lichi, which only has three annotations, all to root nodes:

Here is the view in the Graph Editor:

Here is the view in the Form:

Here is the view in the Standard Annotations editor: which indicates that there are three annotations but does not display any of them:

[vanaukenk]

Thanks for reporting this @krchristie @LiNiMGI

I can reproduce what you see for the mouse gene above, but the weird thing is that it's not happening for me for new entries; they're being displayed properly.

I'll have to dig into this with @tmushayahama

[vanaukenk]

The issue here is a difference between how the standard annotation form is expecting root CC annotations to be expressed vs how they actually are expressed for existing root CC annotations.

@tmushayahama will update the standard annotation editor to simply state 'gp 'is active in' root CC' and I'll test on noctua-dev.

[vanaukenk]

I've tested this on noctua-dev by checking existing models:

MGI Lichi
SGD Msc7
ZFIN cyp4v2b
MGI Wdr35

and also created three new C. elegans root node annotations.

All the annotations seem to be displayed and/or created properly.

@krchristie @LiNiMGI - please also take a look to make sure it's fixed for you, too. Thank you!

[LiNiMGI]

checked a couple MGI genes, yes, it's fixed in noctua-dev, thanks @vanaukenk