Obsoletion request: DNA ligation and descendants

[ValWood]

Please provide as much information as you can:

• GO term ID and Label

DNA ligation and descendants:

GO:1902972 biological_process premeiotic DNA replication DNA ligation
GO:1902973 biological_process mitotic DNA replication DNA ligation
GO:1902327 biological_process bacterial-type DNA replication DNA ligation
GO:1902333 biological_process nuclear DNA replication DNA ligation
GO:1904877 biological_process positive regulation of DNA ligase activity
GO:1904875 biological_process regulation of DNA ligase activity
GO:1902291 biological_process cell cycle DNA replication DNA ligation
GO:0051103 biological_process DNA ligation involved in DNA repair
GO:0051104 biological_process DNA-dependent DNA replication DNA ligation
GO:0051102 biological_process DNA ligation involved in DNA recombination
GO:0051107 biological_process negative regulation of DNA ligation
GO:0051105 biological_process regulation of DNA ligation
GO:0051106 biological_process positive regulation of DNA ligation
GO:0006288 biological_process base-excision repair, DNA ligation

• Reason for deprecation Put an x in the appropriate box:

• The reason for obsoletion is that this term represents a molecular function.

• "Replace by" term (ID and label)
  If all annotations can safely be moved to that term

• "Consider" term(s) (ID and label)
  Suggestions for reannotation

• Are there annotations to this term?

• How many EXP:

• Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section)

• Is this term in a subset? (check the AmiGO page for that term)

• Any other information

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Checklist for ontology editor

Check term usage and metadata in Protégé

• check term usage in the ontology
• check internal mappings: RHEA, EC, MetaCyc
• check subset usage
• check taxon constraints

Check annotations

• create Annotation Review spreadsheet
• • Annotation Review template: https://docs.google.com/spreadsheets/d/1izV3q1jnq_Ybg5MJ53O_b5BCTkGtjl_Fi-cOg3-7eBE/edit#gid=0
• • Instructions: https://wiki.geneontology.org/Annotation_Review_Request
• create annotation review ticket: https://github.com/geneontology/go-annotation/issues/new?assignees=&labels=annotation+review&template=annotation-review-for-obsoletion.md&title=Review+annotations+to+%5BINSERT+GO+TERM%5D
• find external mappings (via IEAS), include in obsoletion notice
• tag curators in Annotation Review ticket. Responsible annotator for each group: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Notification

• create obsoletion announcement
• announce to GO friends ([email protected])
• paste the text in the ontology ticket