Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Review annotations to GO:0097159 organic cyclic compound binding and related terms #5504

Open
raymond91125 opened this issue Nov 6, 2024 · 1 comment
Labels
annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms

Comments

@raymond91125
Copy link
Contributor

raymond91125 commented Nov 6, 2024

Dear all,

The proposal has been made to obsolete
GO:0097159 organic cyclic compound binding
GO:1901378 organic heteropentacyclic compound biosynthetic process
GO:1901377 organic heteropentacyclic compound catabolic process
GO:1901376 organic heteropentacyclic compound metabolic process
GO:0014070 response to organic cyclic compound
GO:0071407 cellular response to organic cyclic compound
see geneontology/go-ontology#29143

The reason for obsoletion is that they are unnecessary grouping terms.

Experimental annotations that need to be reviewed are here:
https://docs.google.com/spreadsheets/d/1X1hTmCFCvDDZN7VXoRSOM8o7_JX6kapbsnnGgv10aGU/edit?gid=0#gid=0

Impacted groups:
AgBase 16 - done
BHF-UCL 3 - done
EcoCyc 1
EcoliWiki 1
MGI 57
RGD 446
UniProt 7
dictyBase 1
PseudoCAP 2
ZFIN 9
CACAO 1

** Group contacts: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)
Reactome:R-HSA-1497796 > GO:organic cyclic compound binding ; GO:0097159

Thanks.

@pgaudet
Copy link
Contributor

pgaudet commented Nov 6, 2024

AgBase and UniProt done

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms
Projects
None yet
Development

No branches or pull requests