Problem on running with fdtd.set_backend("torch") #66
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same issue with the |
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Appears to be caused by pr #63 |
flaport
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Nov 17, 2023
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Hi everyone. My apologies for taking so long to fix this. The fix is now available in fdtd>=0.3.3. |
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Sorry, but i still cant get the examples to work properly, using |
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version 0.3.4 should fix the issue |
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please tell me if im doing something wrong here, but it still does not work? |
flaport
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Dec 7, 2023
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Hi, my apologies... I don't have my computer with cuda GPU anymore so before I thought I could just debug by using the I spun up a VM with a GPU to debug this further. I can now confirm that all example notebooks now succesfully run with My apologies again for making you loose your time 🙂 |
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still appears broken in 0.3.5, when using |
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which notebook is this in? Or is this in a custom notebook? |
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this is in the lenses example |
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**Hello,
When I execute my code with fdtd.set_backend("numpy"), it functions properly. However, switching to fdtd.set_backend("torch") leads to an error:**
Exception has occurred: TypeError
'torch.dtype' object is not callable
File "C:\Users\yo0003\moein\FDTD.py", line 73, in
grid[row:row+1,col:col+1,0] = fdtd.AbsorbingObject(permittivity=45.38,conductivity=0.77, name=str(row) + "," + str(col))
~~~~^^^^^^^^^^^^^^^^^^^^^^^
TypeError: 'torch.dtype' object is not callable
this is my code:
import torch
import fdtd
import numpy as np
from line_profiler import LineProfiler
import nibabel as nib
import matplotlib.pyplot as plt
device = torch.device("cpu")
Load the MNC file
mnc_img = nib.load('C:\Users\yo0003\moein\MATLAB_DRIVE\Matlab\subject04.mnc')
Get the data as a numpy array
data = mnc_img.get_fdata()
pic=20*data[250,:,:]
pic = np.pad(pic, ((10, 10), (10, 10)), mode='constant', constant_values=0)
for i in range(len(pic[:,1])):
for j in range(len(pic[1,:])):
if pic[i,j]==160:
pic[i,j]=20
pic=pic[::4,::4]
plt.imshow(pic)
plt.show()
pic = np.pad(pic, ((40, 40), (40, 40)), 'constant', constant_values=((0, 0), (0, 0)))
Set FDTD backend to CPU
fdtd.set_backend("torch")
Create a 2D grid with a single layer in the z-direction
Lx=len(pic[:,1])
Ly=len(pic[1,:])
freq=1e9
landa=3e8/freq
grid = fdtd.Grid(shape=(Lx, Ly, 1), grid_spacing=0.1*landa)
Brain=np.zeros((Lx, Ly,2))
# Add a light source
grid[20, 20, 0] = fdtd.PointSource(period=landa/3e8, name="source")
#*********************************************************
avg
#*********************************************************
loc=np.where(pic==120)
try:
# Your problematic code here, e.g.:
grid[40:50,50:60,0] = fdtd.Object(permittivity=45)
except Exception as e:
print("Error:", str(e))
for row, col in zip(*loc):
grid[row:row+1,col:col+1,0] = fdtd.AbsorbingObject(permittivity=45.38,conductivity=0.77, name=str(row) + "," + str(col))
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