tyssue-taylor - From experimental data to a tyssue model

This package uses the tyssue library to adjust a vertex model to experimental microscopy data.

Dependencies

tifffile
swig
opencv
tyssue > 0.5
sympy
tensorflow
stardist
python >= 3.6

Installation

clone this repository from github:

git clone https://github.com/glyg/tyssue-taylor.git

In the cloned repository create a virtual environment with conda:

cd tyssue-taylor
conda env create -f environment.yml

Create the environment and install the package

conda activate taylor
python setup.py install

Tests

Licence

This project is distributed under the terms of the Modzilla Public Licence.

Use

TODO