-
Notifications
You must be signed in to change notification settings - Fork 2
/
mkdocs.yml
165 lines (155 loc) · 5.89 KB
/
mkdocs.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
site_name: Drug Design Org
site_description: Drug Design
repo_url: https://github.com/drug-design/course
site_url: https://drugdesign.org
edit_uri: ./edit/main/docs
theme:
icon:
logo: simple/moleculer
repo: fontawesome/brands/github
language: en
palette:
- scheme: default
toggle:
icon: material/brightness-7
name: Switch to dark mode
# Palette toggle for dark mode
- scheme: slate
toggle:
icon: material/brightness-4
name: Switch to light mode
name: material
features:
- navigation.instant
- navigation.tabs
- navigation.tracking
extra:
analytics:
provider: google
property: G-ZE99EFPJJ0
# alternate:
# - name: English
# link: /en/
# lang: en
# disqus: drugdesign-org
extra_css:
- https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.3/css/all.min.css
- stylesheets/extra.css
extra_javascript:
- https://unpkg.com/ngl@latest/dist/ngl.js
- https://code.jquery.com/jquery-3.6.0.min.js
- js/course.js
plugins:
- glightbox:
touchNavigation: true
loop: false
effect: zoom
width: 100%
height: auto
zoomable: true
draggable: true
auto_caption: false
caption_position: bottom
- search:
prebuild_index: python
markdown_extensions:
- pymdownx.tabbed:
alternate_style: true
- pymdownx.critic
- pymdownx.caret
- pymdownx.keys
- pymdownx.mark
- pymdownx.tilde
- attr_list
- footnotes
- admonition
- pymdownx.superfences
- pymdownx.details
- pymdownx.snippets
- pymdownx.emoji:
emoji_index: !!python/name:material.extensions.emoji.twemoji
emoji_generator: !!python/name:material.extensions.emoji.to_svg
- abbr
- toc:
permalink: true
toc_depth: 2
# Copyright
copyright: Copyright © 2022 drugdesign.org
nav:
- About:
- "drugdesign.org": README.md
- "ChangeLog": site/changelog.md
- 'N. Claude Cohen': site/claude-cohen.md
- 'Contributors': site/contributors.md
- 'About & Contact': site/contact.md
- 'Roadmap': site/roadmap.md
- 'Terms of Use & Copyright': site/copyright.md
- Learning:
- Drug Discovery:
- 'Drug Discovery': chapters/drug-discovery.md
- 'Drug Design': chapters/drug-design.md
- 'Structure Activity Relationships': chapters/structure-activity-relationships.md
- 'Case Studies in SAR Analyses': chapters/structure-activity-relationships-case-studies.md
- 'Success Stories in Drug Discovery': chapters/success-stories-in-drug-discovery.md
- Synthesis of Drugs:
- 'Synthesis of Drugs': chapters/synthesis-of-drugs.md
- Library Design:
- 'Library Design': chapters/library-design.md
- 'Case Studies in Library Design': chapters/library-design-case-studies.md
- ADME Properties:
- 'Pharmacokinetics': chapters/adme-properties.md
- 'Case Studies in ADME/Tox Predictions': chapters/adme-case-studies.md
- Protein Structure:
- 'Structural Bioinformatics': chapters/structural-bioinformatics.md
- 'Protein Structure': chapters/protein-structure.md
- Molecular Docking:
- 'Molecular Docking': chapters/molecular-docking.md
- 'Case Studies of Docking in Drug Discovery': chapters/molecular-docking-case-studies.md
- Cheminformatics:
- 'Cheminformatics': chapters/cheminformatics.md
- 'Encoding Molecules': chapters/encoding-molecules.md
- 'Molecular Similarity': chapters/molecular-similarity.md
- Molecular Mimicry:
- 'Bioisosterism' : chapters/bioisosterism.md
- 'Peptidomimetics': chapters/peptidomimetics.md
- 'Case Studies in Analog Design': chapters/analog-design-case-studies.md
- 'Case Studies in 3D Mimic Design': chapters/3d-mimic-design-case-studies.md
- 'Peptidomimetics examples': chapters/peptidomimetics-case-studies.md
- Database Searching:
- '3D Database Searching': chapters/3d-database-searching.md
- 'Case Studies in 3D Database Searching': chapters/3d-database-searching-case-studies.md
- Ligand-Based Design:
- 'Principles in Pharmacophore Elucidation': chapters/pharmacophore-elucidation.md
- 'Ligand-Based Approaches': chapters/ligand-based-approaches.md
- 'Examples of Pharmacophores': chapters/pharmacophore-examples.md
- Structure-Based Design:
- 'Introduction to Protein-Ligand Binding': chapters/protein-ligand-binding.md
- 'Principles of Structure-Based Design': chapters/structure-based-design.md
- 'Case Studies in Structure-Based Designs': chapters/structure-based-design-case-studies.md
- QSAR & 3D-QSAR:
- 'QSAR': chapters/qsar.md
- '3D-QSAR': chapters/3d-qsar.md
- 'Case Studies in QSAR and 3D-QSAR': chapters/qsar-case-studies.md
- Small Molecule Geometry:
- 'Molecular Geometry': chapters/molecular-geometry.md
- 'Molecular Properties': chapters/molecular-properties.md
- 'Stereochemistry': chapters/stereochemistry.md
- 'Molecular Energies': chapters/molecular-energies.md
- 'Conformational Analysis': chapters/conformational-analysis.md
- 'Molecular Graphics': chapters/molecular-graphics.md
- 'Selected Examples in 3D Analysis': chapters/conformational-analysis-examples.md
- Molecular Dynamics:
- 'Molecular Dynamics': chapters/molecular-dynamics.md
- External Courses & Tutorials:
- Erik Lindahl Course: external/erik-lindahl.md
- TeachOpenCADD: tutorials/teachopencadd.md
# - New Contributions:
# - 'New contributions': site/new-contributions.md
- Teaching:
- 'The Sharing Program': site/sharing-program.md
#- 'Content Concept': site/concept.md
- 'Customize to Your Need': site/subdomain.md
- 'The Platform': site/platform.md
#- 'Create New Content': site/new-content.md
#- 'MarkDown Template': site/template.md
- 'Content Idea': site/contribution-idea.md