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run R model via singularity on ASU HPC #47

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alee opened this issue Apr 16, 2019 · 1 comment
Open

run R model via singularity on ASU HPC #47

alee opened this issue Apr 16, 2019 · 1 comment

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@alee
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alee commented Apr 16, 2019

Singularity is available on all compute nodes via

module load singularity/2.6.0

https://rcstatus.asu.edu/agave/howto/software_modules.php

From William Dixon:

Also take note, you'll need to be sure to be on a compute node when using Singularity (login nodes are very low resource and would not run containers well at all). Running on a compute node is done if you submit your job via SBATCH or also if you are loading it interactively. See here for more information about interactively running containers:

https://rcstatus.asu.edu/agave/howto/interactive_sessions.php

@alee
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alee commented Apr 16, 2019

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