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upgrade to kubecf-v2.7.1, scheduler pods disappeared. #1675

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ShuangMen opened this issue Jan 7, 2021 · 9 comments
Open

upgrade to kubecf-v2.7.1, scheduler pods disappeared. #1675

ShuangMen opened this issue Jan 7, 2021 · 9 comments
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Type: Bug Something isn't working

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@ShuangMen
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ShuangMen commented Jan 7, 2021 •
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Describe the bug
step 1. kubecf v2.6.1 installed in Kubernetes (version 1.19.5_1529)
step 2. run helm upgrade kubecf, try to upgrade kubecf to v2.7.1, with 'cc_deployment_updater: false' in file 'config/jobs.yaml'

after upgrade, check the statefulsets:

$k get statefulset -n kubecf
NAME                     READY   AGE
api-z0                   1/1     163m
api-z1                   1/1     163m
auctioneer               1/1     164m
cc-worker-z0             1/1     164m
cc-worker-z1             1/1     164m
database                 1/1     165m
diego-api-z0             1/1     164m
diego-api-z1             1/1     164m
diego-cell-z0            1/1     164m
diego-cell-z1            1/1     164m
doppler-z0               1/1     164m
doppler-z1               1/1     164m
log-api-z0               1/1     164m
log-api-z1               1/1     164m
log-cache                1/1     164m
nats-z0                  1/1     164m
nats-z1                  1/1     164m
router-z0                1/1     164m
router-z1                1/1     164m
scheduler-z0             1/1     164m
scheduler-z1             1/1     164m
singleton-blobstore-z0   1/1     164m
uaa-z0                   1/1     164m
uaa-z1                   1/1     164m

but from the cf-operator quarks-statefulset logs, there are many errors for statefulsets update, one of them is like below.

2021-01-07T03:54:45.947Z        ^[[31mERROR^[[0m        statefulset-rollout-reconciler  statefulset/statefulset_rollout_reconciler.go:172       Error updating StatefulSet 'kubecf/scheduler-z0' with partition move: Conflict while updating stateful set: Operation cannot be fulfilled on statefulsets.apps "scheduler-z0": the object has been modified; please apply your changes to the latest version and try again
code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/statefulset.(*ReconcileStatefulSetRollout).Reconcile
        /go/src/code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/statefulset/statefulset_rollout_reconciler.go:172
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).reconcileHandler
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/sigs.k8s.io/controller-runtime/pkg/internal/controller/controller.go:244
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).processNextWorkItem
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/sigs.k8s.io/controller-runtime/pkg/internal/controller/controller.go:218
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).worker
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/sigs.k8s.io/controller-runtime/pkg/internal/controller/controller.go:197
k8s.io/apimachinery/pkg/util/wait.BackoffUntil.func1
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/k8s.io/apimachinery/pkg/util/wait/wait.go:155
k8s.io/apimachinery/pkg/util/wait.BackoffUntil
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/k8s.io/apimachinery/pkg/util/wait/wait.go:156
k8s.io/apimachinery/pkg/util/wait.JitterUntil
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/k8s.io/apimachinery/pkg/util/wait/wait.go:133
k8s.io/apimachinery/pkg/util/wait.Until

seems the statefulsets not upgrade successfully.

step 3. run helm upgrade kubecf again and check the pod status

$ k get pod -n kubecf
NAME                                     READY   STATUS      RESTARTS   AGE
api-z0-0                                 17/17   Running     16         120m
api-z1-0                                 17/17   Running     16         120m
auctioneer-0                             6/6     Running     1          121m
cc-worker-z0-0                           6/6     Running     0          120m
cc-worker-z1-0                           6/6     Running     0          121m
cf-apps-dns-59f9f659f5-c4z5g             1/1     Running     0          125m
coredns-quarks-6db68476bd-4pjvh          1/1     Running     0          173m
coredns-quarks-6db68476bd-cdqtm          1/1     Running     0          173m
database-0                               2/2     Running     0          124m
database-seeder-10807f69f53c6e0f-hpxmr   0/2     Completed   0          46h
database-seeder-7a19efc54ebbb714-pqtbg   0/2     Completed   0          47d
database-seeder-c400c55f793c774c-5ltcb   0/2     Completed   0          3h38m
database-seeder-d49344d80353dd73-gmljj   0/2     Completed   0          47d
database-seeder-e421e917deb27f22-mps4r   0/2     Completed   0          173m
diego-api-z0-0                           9/9     Running     2          120m
diego-api-z1-0                           9/9     Running     2          120m
diego-cell-z0-0                          12/12   Running     9          120m
diego-cell-z1-0                          12/12   Running     9          120m
doppler-z0-0                             6/6     Running     0          121m
doppler-z1-0                             6/6     Running     0          121m
ian-nsenter-10.240.64.24                 0/1     Completed   0          7d
log-api-z0-0                             9/9     Running     0          120m
log-api-z1-0                             9/9     Running     0          120m
log-cache-0                              10/10   Running     0          121m
nats-z0-0                                7/7     Running     0          121m
nats-z1-0                                7/7     Running     0          121m
router-z0-0                              7/7     Running     0          121m
router-z1-0                              7/7     Running     0          121m
singleton-blobstore-z0-0                 8/8     Running     0          121m
uaa-z0-0                                 8/8     Running     0          121m
uaa-z1-0                                 8/8     Running     0          121m

no "scheduler" pods there.

$ k get statefulset -n kubecf
NAME                     READY   AGE
api-z0                   1/1     172m
api-z1                   1/1     172m
auctioneer               1/1     172m
cc-worker-z0             1/1     172m
cc-worker-z1             1/1     172m
database                 1/1     174m
diego-api-z0             1/1     172m
diego-api-z1             1/1     172m
diego-cell-z0            1/1     172m
diego-cell-z1            1/1     172m
doppler-z0               1/1     172m
doppler-z1               1/1     172m
log-api-z0               1/1     172m
log-api-z1               1/1     172m
log-cache                1/1     172m
nats-z0                  1/1     172m
nats-z1                  1/1     172m
router-z0                1/1     172m
router-z1                1/1     172m
scheduler-z0             0/1     172m   <<
scheduler-z1             0/1     172m   <<
singleton-blobstore-z0   1/1     173m
uaa-z0                   1/1     172m
uaa-z1                   1/1     172m

$ k describe statefulset scheduler-z0 -n kubecf
and get below error:

Events:
  Type     Reason            Age                    From                          Message
  ----     ------            ----                   ----                          -------
  Normal   SuccessfulDelete  4m13s                  statefulset-controller        delete Pod scheduler-z0-0 in StatefulSet scheduler-z0 successful
  Normal   Predicates        3m56s (x17 over 173m)  statefulset-rollout-recorder  {"reconciliationObjectName":"scheduler-z0","reconciliationObjectKind":"StatefulSet","predicateObjectName":"scheduler-z0","predicateObjectKind":"StatefulSet","namespace":"kubecf","message":"Update predicate passed for 'kubecf/scheduler-z0' for statefulset rollout","type":"Predicates"}
  Warning  FailedCreate      65s (x16 over 3m54s)   statefulset-controller        create Pod scheduler-z0-0 in StatefulSet scheduler-z0 failed error: Pod "scheduler-z0-0" is invalid: spec.containers[0].image: Required value

check the log of cf-operator-quarks-statefulset,

2021-01-07T06:02:27.755Z        ^[[31mERROR^[[0m        statefulset-rollout-reconciler  statefulset/statefulset_rollout_util.go:65      Pods scheduler-z0-0 belonging to StatefulSet not foundkubecf/scheduler-z0:Pod "scheduler-z0-0" not found
code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/statefulset.getPodWithIndex
        /go/src/code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/statefulset/statefulset_rollout_util.go:65
code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/statefulset.partitionPodIsReadyAndUpdated
        /go/src/code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/statefulset/statefulset_rollout_reconciler.go:254
code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/statefulset.(*ReconcileStatefulSetRollout).Reconcile
        /go/src/code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/statefulset/statefulset_rollout_reconciler.go:130
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).reconcileHandler
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/sigs.k8s.io/controller-runtime/pkg/internal/controller/controller.go:244
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).processNextWorkItem
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/sigs.k8s.io/controller-runtime/pkg/internal/controller/controller.go:218
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).worker
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/sigs.k8s.io/controller-runtime/pkg/internal/controller/controller.go:197
k8s.io/apimachinery/pkg/util/wait.BackoffUntil.func1
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/k8s.io/apimachinery/pkg/util/wait/wait.go:155
k8s.io/apimachinery/pkg/util/wait.BackoffUntil
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/k8s.io/apimachinery/pkg/util/wait/wait.go:156
k8s.io/apimachinery/pkg/util/wait.JitterUntil
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/k8s.io/apimachinery/pkg/util/wait/wait.go:133
k8s.io/apimachinery/pkg/util/wait.Until
        /go/src/code.cloudfoundry.org/quarks-statefulset/vendor/k8s.io/apimachinery/pkg/util/wait/wait.go:90
2021-01-07T06:02:27.755Z        ^[[35mDEBUG^[[0m        statefulset-rollout-reconciler  statefulset/statefulset_rollout_reconciler.go:165       Statefulset rollout for 'kubecf/scheduler-z0' is in status Canary

To Reproduce
run helm upgrade from kubecf v2.6.1 (on Kubernetes 1.19) to kubecf-v2.7.1, then run helm upgrade again.

Expected behavior
helm upgrade successfully with all pods running well.

Environment

  • CF Version: kubecf-v2.7.1
  • Component/Plugin Name
  • Others
@ShuangMen ShuangMen added the Type: Bug Something isn't working label Jan 7, 2021
@ShuangMen ShuangMen changed the title after upgrade to kubecf-v2.7.1, scheduler pods disappeared. upgrade to kubecf-v2.7.1, scheduler pods disappeared. Jan 7, 2021
@ShuangMen
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ShuangMen commented Jan 7, 2021 •
edited
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There are 2 issues found from above upgrade process.

  • after step 2, the statefulsets not upgrade successfully.

  • after step3, the scheduler's statefulset updated with incorrect and incomplete container "cc-deployment-updater-cc-deployment-updater" information, which cause the scheduler pods fail.

...
      containers:
      - imagePullPolicy: IfNotPresent
        name: cc-deployment-updater-cc-deployment-updater
        resources: {}
        terminationMessagePath: /dev/termination-log
        terminationMessagePolicy: File
...
  - apiVersion: apps/v1
    fieldsType: FieldsV1
    fieldsV1:
      f:spec:
        f:template:
          f:spec:
            f:containers:
              k:{"name":"cc-deployment-updater-cc-deployment-updater"}:
                .: {}
                f:imagePullPolicy: {}
                f:name: {}
                f:resources: {}
                f:terminationMessagePath: {}
                f:terminationMessagePolicy: {}
    manager: kubectl-patch
    operation: Update
    time: "2021-01-07T05:58:09Z"
...

with 'cc_deployment_updater: false', no "cc-deployment-updater-cc-deployment-updater" should be created in scheduler pod.

https://github.com/cloudfoundry-incubator/kubecf/blob/master/chart/hooks/pre-upgrade/remove-deployment-updater-readiness.sh
need to add a check before doing the patch to scheduler's statefulset.

@ShuangMen ShuangMen mentioned this issue Jan 7, 2021
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@jandubois
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but from the cf-operator quarks-statefulset logs, there are many errors for statefulsets update

I cannot reproduce this issue; are you sure you updated cf-operator before updating kubecf, as 2.7.1 requires cf-operator 7.xx and 2.6.1 uses cf-operator 6.xx.

Anyways, your patch to check that the cf-deployment-update job exists before patching looks correct, so I've approved it, but it would be good to understand the root cause of your initial problem.

@ShuangMen
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ShuangMen commented Jan 8, 2021 •
edited
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Thanks for your comments @jandubois.
yes, I did upgrade the cf-operator to the related version before upgrade kubecf.

For the issue

but from the cf-operator quarks-statefulset logs, there are many errors for statefulsets update

I will do more test and investigation.

@ShuangMen
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when I tried reproduce the issue from the cf-operator quarks-statefulset logs, there are many errors for statefulsets update
I installed cf-operator v6.1.17-0.gec409fd7, and then try to install kubecf v2.6.1.
there is no pod created in kubecf, I checked the log file of cf-operator and found below errors.

2021-01-12T03:53:21.328Z	ERROR	quarks-statefulset-reconciler	quarksstatefulset/quarksstatefulset_reconciler.go:147	Could not create StatefulSet for QuarksStatefulSet 'kubecf/database': could not create or update StatefulSet 'database' for QuarksStatefulSet 'kubecf/database': Internal error occurred: failed calling webhook "mutate-statefulsets.quarks.cloudfoundry.org": Post "https://qsts-webhook.cf-operator.svc:443/mutate-statefulsets?timeout=30s": service "qsts-webhook" not found
code.cloudfoundry.org/quarks-statefulset/pkg/kube/controllers/quarksstatefulset.(*ReconcileQuarksStatefulSet).Reconcile
	/go/pkg/mod/code.cloudfoundry.org/[email protected]/pkg/kube/controllers/quarksstatefulset/quarksstatefulset_reconciler.go:147
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).reconcileHandler
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:244
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).processNextWorkItem
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:218
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).worker
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:197
k8s.io/apimachinery/pkg/util/wait.BackoffUntil.func1
	/go/pkg/mod/k8s.io/[email protected]/pkg/util/wait/wait.go:155
k8s.io/apimachinery/pkg/util/wait.BackoffUntil
	/go/pkg/mod/k8s.io/[email protected]/pkg/util/wait/wait.go:156
k8s.io/apimachinery/pkg/util/wait.JitterUntil
	/go/pkg/mod/k8s.io/[email protected]/pkg/util/wait/wait.go:133
k8s.io/apimachinery/pkg/util/wait.Until
	/go/pkg/mod/k8s.io/[email protected]/pkg/util/wait/wait.go:90
2021-01-12T03:53:21.328Z	ERROR	controller	controller/controller.go:246	Reconciler error	{"controller": "quarks-statefulset-controller", "name": "database", "namespace": "kubecf", "error": "could not create StatefulSet for QuarksStatefulSet 'kubecf/database': could not create or update StatefulSet 'database' for QuarksStatefulSet 'kubecf/database': Internal error occurred: failed calling webhook \"mutate-statefulsets.quarks.cloudfoundry.org\": Post \"https://qsts-webhook.cf-operator.svc:443/mutate-statefulsets?timeout=30s\": service \"qsts-webhook\" not found"}
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).reconcileHandler
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:246
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).processNextWorkItem
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:218
sigs.k8s.io/controller-runtime/pkg/internal/controller.(*Controller).worker
	/go/pkg/mod/sigs.k8s.io/[email protected]/pkg/internal/controller/controller.go:197
k8s.io/apimachinery/pkg/util/wait.BackoffUntil.func1
	/go/pkg/mod/k8s.io/[email protected]/pkg/util/wait/wait.go:155
k8s.io/apimachinery/pkg/util/wait.BackoffUntil
	/go/pkg/mod/k8s.io/[email protected]/pkg/util/wait/wait.go:156
k8s.io/apimachinery/pkg/util/wait.JitterUntil
	/go/pkg/mod/k8s.io/[email protected]/pkg/util/wait/wait.go:133
k8s.io/apimachinery/pkg/util/wait.Until
	/go/pkg/mod/k8s.io/[email protected]/pkg/util/wait/wait.go:90

@will-gant
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I think we're hitting the same issue with a fresh install of 2.7.1.

Post-deploy the scheduler has 0/1 pods ready. Running kubectl decsribe on the statefulset reveals the following:

Warning  FailedCreate      12m (x40 over 138m)   statefulset-controller        create Pod scheduler-0 in StatefulSet scheduler failed error: Pod "scheduler-0" is invalid: spec.containers[0].image: Required value
Warning  FailedCreate      4m47s (x17 over 10m)  statefulset-controller        create Pod scheduler-0 in StatefulSet scheduler failed error: Pod "scheduler-0" is invalid: spec.containers[0].image: Required value

And indeed when running get statefulset scheduler -n kubecf -o yaml we can see that the first element in the containers array is this, which is missing an image field:

- imagePullPolicy: IfNotPresent
  name: cc-deployment-updater-cc-deployment-updater
  resources: {}
  terminationMessagePath: /dev/termination-log
  terminationMessagePolicy: File

@andy-paine
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As a followup on the above, we removed the bad cc-deployment-updater-cc-deployment-updater container and the scheduler StatefulSet deployed its Pod properly and things started working for us. Checking the ops-file ConfigMaps, I can see an operation for that job:

{
    "type": "remove",
    "path": "/instance_groups/name=scheduler/jobs/name=cc_deployment_updater"
}

so I would expect it to be removed but it appears that it is removing it enough that cf-operator isn't adding any of the interesting bits like the image but not removing it enough to actually drop the whole container. This is a non-HA deployment.

will-gant added a commit to EngineerBetter/kubecf-pipelines that referenced this issue Jan 12, 2021
@will-gant
Pin to 2.6.1 of KubeCF for now
3fcb87f 
2.7.1 has an annoying bug that breaks the scheduler: cloudfoundry-incubator/kubecf#1675
@ShuangMen
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for the cc_deployment_updater issue, the fix is merged #1676.
it will do a check before patch to to scheduler statefulset.

@andy-paine
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Ah right. It would be good if a new release with that fix could be cut because as far as we can see, 2.7.1 doesn't actually work fully on a fresh install. Thanks for getting back to us @ShuangMen 🙂

@jandubois
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@andy-paine There should be a new release within the next few days.

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