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First of all, hifiasm gave me very good results on my hexaploïd wheat assembly. It is a 15Gb genome, so we did 6 Hifi smrtcells to get ~30X coverage.
The question I have is about the memory usage of the program. hifiasm outputs the reads in the *.ec.fa file but the 6 Hifi smrtcells fasta file count as >450Go which is huge. The computing cluster I use allows me to allocate that amount of memory but I would like to know if an option to discard that file will be up in the next patches / versions ?
Best,
Paillou
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Discard the outputs reads *.ec.fa file
Discard the output file reads *.ec.fa
Sep 19, 2024
Hello,
First of all,
hifiasm
gave me very good results on my hexaploïd wheat assembly. It is a 15Gb genome, so we did 6 Hifi smrtcells to get ~30X coverage.The question I have is about the memory usage of the program.
hifiasm
outputs the reads in the*.ec.fa
file but the 6 Hifi smrtcells fasta file count as >450Go which is huge. The computing cluster I use allows me to allocate that amount of memory but I would like to know if an option to discard that file will be up in the next patches / versions ?Best,
Paillou
The text was updated successfully, but these errors were encountered: