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Discard the output file reads *.ec.fa #705

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pailloufat-stack opened this issue Sep 19, 2024 · 0 comments
Open

Discard the output file reads *.ec.fa #705

pailloufat-stack opened this issue Sep 19, 2024 · 0 comments

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@pailloufat-stack
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Hello,

First of all, hifiasm gave me very good results on my hexaploïd wheat assembly. It is a 15Gb genome, so we did 6 Hifi smrtcells to get ~30X coverage.

The question I have is about the memory usage of the program. hifiasm outputs the reads in the *.ec.fa file but the 6 Hifi smrtcells fasta file count as >450Go which is huge. The computing cluster I use allows me to allocate that amount of memory but I would like to know if an option to discard that file will be up in the next patches / versions ?

Best,
Paillou

@pailloufat-stack pailloufat-stack changed the title Discard the outputs reads *.ec.fa file Discard the output file reads *.ec.fa Sep 19, 2024
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