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Inconsistency in ScanImageTiffSinglePlaneImagingExtractor sampling frequency data for multi-channels and multi-planes imaging data #262

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alessandratrapani opened this issue Nov 20, 2023 · 0 comments

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@alessandratrapani
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alessandratrapani commented Nov 20, 2023

For multi-channel and multi-planes imaging data, the sampling frequency extracted is the one for the round-robin acquisition

self._sampling_frequency = parsed_metadata["sampling_frequency"]

The sampling frequency for the volumetric imaging should be the sampling frequency of the single channel. ('SI.hRoiManager.scanVolumeRate' ScanImage metadata)
We could define an extra property: plane_rate_acquisition that would be equivalent to the round-robin acquisition rate

This solution stand on the assumption that all channels are acquired at the same time

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