From d929d556dbe80dae14ec63eac7a0d8af4b33e802 Mon Sep 17 00:00:00 2001 From: h-mayorquin Date: Wed, 27 Jul 2022 16:22:10 +0200 Subject: [PATCH 1/4] release 0.4.18 --- CHANGELOG.md | 11 ++++++++++- setup.py | 2 +- 2 files changed, 11 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index ea71026a..139afee9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,12 +1,21 @@ # Upcoming +### Features + +### Improvements + +### Fixes + +### Testing + +# v0.4.17 + ### Improvements * `get_video` is now an abstract method in `ImagingExtractor` [PR #180](https://github.com/catalystneuro/roiextractors/pull/180) ### Features * Add dummy segmentation extractor [PR #176](https://github.com/catalystneuro/roiextractors/pull/176) - ### Testing * Added unittests to the `get_frames` method from `ImagingExtractors` to assert that they are consistent with numpy indexing behavior. [PR #154](https://github.com/catalystneuro/roiextractors/pull/154) diff --git a/setup.py b/setup.py index 6d8a96ce..97e4ecb7 100644 --- a/setup.py +++ b/setup.py @@ -24,7 +24,7 @@ setup( name="roiextractors", - version="0.4.17", + version="0.4.18", author="Heberto Mayorquin, Cody Baker, Ben Dichter, Alessio Buccino", author_email="ben.dichter@gmail.com", description="Python module for extracting optical physiology ROIs and traces for various file types and formats", From 8194b6ef1da2d9f4246d3dd6986fce7ef81756bb Mon Sep 17 00:00:00 2001 From: h-mayorquin Date: Wed, 27 Jul 2022 16:23:44 +0200 Subject: [PATCH 2/4] release 0.4.18 --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 139afee9..fa8543fd 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,7 +8,7 @@ ### Testing -# v0.4.17 +# v0.4.18 ### Improvements * `get_video` is now an abstract method in `ImagingExtractor` [PR #180](https://github.com/catalystneuro/roiextractors/pull/180) From ec0fd77de272fb9d5380015a8aaa74162cca6133 Mon Sep 17 00:00:00 2001 From: Cody Baker <51133164+CodyCBakerPhD@users.noreply.github.com> Date: Wed, 27 Jul 2022 10:41:06 -0400 Subject: [PATCH 3/4] add old changelog notes --- CHANGELOG.md | 20 +++++++++++++++++++- 1 file changed, 19 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index fa8543fd..b1e4accb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,7 +8,7 @@ ### Testing -# v0.4.18 +# v0.4.17 ### Improvements * `get_video` is now an abstract method in `ImagingExtractor` [PR #180](https://github.com/catalystneuro/roiextractors/pull/180) @@ -21,4 +21,22 @@ indexing behavior. [PR #154](https://github.com/catalystneuro/roiextractors/pull/154) * Tests for spikeinterface like-behavior for the `get_video` funtiction [PR #181](https://github.com/catalystneuro/roiextractors/pull/181) + + # v0.4.17 + +### Depreceations +- Suite2P argument has become `folder_path` instead of `file_path`, `file_path` deprecation scheduled for august or later. + +### Documentation +- Improved docstrings across many extractors. + +### Features +- Adds MultiImagingExtractor for combining multiple imaging extractors. +- Adds ScanImageTiffExtractor for reading .tiff files output from ScanImage +- Adds NumpyImagingExtractor for extracting raw video data as memmaps. +- Added frame slicing capabilities for imaging extractors. + +### Testing +- Added checks and debugs that all sampling frequencies returns are floats +- Round trip testing working for all extractors that have a working write method. From d34c2811990c96c95045ac337cb62a84d5a29409 Mon Sep 17 00:00:00 2001 From: Cody Baker <51133164+CodyCBakerPhD@users.noreply.github.com> Date: Wed, 27 Jul 2022 10:42:11 -0400 Subject: [PATCH 4/4] fix incorrect merge conflict --- CHANGELOG.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index b1e4accb..dd08477e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,7 +8,9 @@ ### Testing -# v0.4.17 + + +# v0.4.18 ### Improvements * `get_video` is now an abstract method in `ImagingExtractor` [PR #180](https://github.com/catalystneuro/roiextractors/pull/180)