From 6f49b76f5e2e202b21a4ff69a1b85d1fe01e266a Mon Sep 17 00:00:00 2001 From: Heberto Mayorquin Date: Wed, 6 Nov 2024 12:00:41 -0600 Subject: [PATCH] update conversion notes --- src/kim_lab_to_nwb/conversion_notes.md | 7 ++++++- src/kim_lab_to_nwb/kim_conversion.py | 2 +- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/src/kim_lab_to_nwb/conversion_notes.md b/src/kim_lab_to_nwb/conversion_notes.md index f80b523..767ef39 100644 --- a/src/kim_lab_to_nwb/conversion_notes.md +++ b/src/kim_lab_to_nwb/conversion_notes.md @@ -10,4 +10,9 @@ # data(5,:) is y-position of the visual pattern # data(6,:) is 2-photon frame synchronization signal (1 pulse corresponds to 1 frame) # data(7,:) is behavior camera signal (1 pulse corresponds to 1 frame) -# data(8,:) indicates the start of a stimulus (it is empty in this example) \ No newline at end of file +# data(8,:) indicates the start of a stimulus (it is empty in this example) + +# Questions for the meeting on 2024-11-06 +* The data that you shared with us? is this associated with a paper? is this something you are interested on sharing on dandi? What are the expectations of the code +* The tiff format, what kind of microscope is it? Scanimage? If you could send me the model that would be useful. +* How is the stimuli presented? That is, I have two images, are they presented on time?` diff --git a/src/kim_lab_to_nwb/kim_conversion.py b/src/kim_lab_to_nwb/kim_conversion.py index 3dc7545..db3155b 100644 --- a/src/kim_lab_to_nwb/kim_conversion.py +++ b/src/kim_lab_to_nwb/kim_conversion.py @@ -176,7 +176,7 @@ def convert_session_to_nwb( if __name__ == "__main__": # Example usage with the original paths data_folder_path = Path("/Users/heberto/project_data/Sample data-selected/Kim Lab") - + data_folder_path = Path("/home/heberto/cohen_project/Sample data/Kim Lab") # Define input paths matlab_data_file_path = data_folder_path / "raw data" / "data_20240108b_00003.mat" video_file_path = data_folder_path / "raw data" / "20240108b_00003.avi"