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Found bam file: /home/i439h/projects/heroes-aya-pools/AG_Thongjuea/Result/10x_multiomics/CellRanger_ARC/1016715_pool3_hg38/outs/gex_possorted_bam.bam for genotyping.
Wed Mar 20 12:38:37 CET 2024: Found file of barcodes to be parsed: /home/i439h/projects/heroes-aya-pools/AG_Thongjuea/Code/bulkWGS/Sadeghi/mgatk/barcodes.tsv
Wed Mar 20 12:38:39 CET 2024: User specified mitochondrial genome matches .bam file
Wed Mar 20 12:43:06 CET 2024: Finished determining/splitting barcodes for genotyping.
Wed Mar 20 12:43:12 CET 2024: Genotyping samples with 20 threads
Error in checkGrep(grep(".A.txt", files)) :
Improper folder specification; file missing / extra file present. See documentation
Calls: importMito -> checkGrep
Execution halted
The text was updated successfully, but these errors were encountered:
Found bam file: /home/i439h/projects/heroes-aya-pools/AG_Thongjuea/Result/10x_multiomics/CellRanger_ARC/1016715_pool3_hg38/outs/gex_possorted_bam.bam for genotyping.
Wed Mar 20 12:38:37 CET 2024: Found file of barcodes to be parsed: /home/i439h/projects/heroes-aya-pools/AG_Thongjuea/Code/bulkWGS/Sadeghi/mgatk/barcodes.tsv
Wed Mar 20 12:38:39 CET 2024: User specified mitochondrial genome matches .bam file
Wed Mar 20 12:43:06 CET 2024: Finished determining/splitting barcodes for genotyping.
Wed Mar 20 12:43:12 CET 2024: Genotyping samples with 20 threads
Error in checkGrep(grep(".A.txt", files)) :
Improper folder specification; file missing / extra file present. See documentation
Calls: importMito -> checkGrep
Execution halted
The text was updated successfully, but these errors were encountered: