forked from hadley/adv-r
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Conditions.Rmd
1181 lines (901 loc) · 40.6 KB
/
Conditions.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
# Conditions {#conditions}
```{r, include = FALSE}
source("common.R")
```
## Introduction
The __condition__ system provides a paired set of tools that allow the author of a function to indicate that something unusual is happening, and the user of that function to deal with it. The function author __signals__ conditions with functions like `stop()` (for errors), `warning()` (for warnings), and `message()` (for messages), then the function user can handle them with functions like `tryCatch()` and `withCallingHandlers()`. Understanding the condition system is important because you'll often need to play both roles: signalling conditions from the functions you create, and handle conditions signalled by the functions you call.
R offers a very powerful condition system based on ideas from Common Lisp. Like R's approach to object-oriented programming, it is rather different to currently popular programming languages so it is easy to misunderstand, and there has been relatively little written about how to use it effectively. Historically, this has meant that few people (myself included) have taken full advantage of its power. The goal of this chapter is to remedy that situation. Here you will learn about the big ideas of R's condition system, as well as learning a bunch of practical tools that will make your code stronger.
I found two resources particularly useful when writing this chapter. You may also want to read them if you want to learn more about the inspirations and motivations for the system:
* [_A prototype of a condition system for R_][prototype] by Robert Gentleman
and Luke Tierney. This describes an early version of R's condition system.
While the implementation has changed somewhat since this document was
written, it provides a good overview of how the pieces fit together, and
some motivation for its design.
* [_Beyond exception handling: conditions and restarts_][beyond-handling]
by Peter Seibel. This describes exception handling in Lisp, which happens
to be very similar to R's approach. It provides useful motivation and
more sophisticated examples. I have provided an R translation of the
chapter at <http://adv-r.had.co.nz/beyond-exception-handling.html>.
I also found it helpful to work through the underlying C code that implements these ideas. If you're interested in understanding how it all works, you might find [my notes](https://gist.github.com/hadley/4278d0a6d3a10e42533d59905fbed0ac) to be useful.
### Quiz {-}
Want to skip this chapter? Go for it, if you can answer the questions below. Find the answers at the end of the chapter in Section \@ref(conditions-answers).
1. What are the three most important types of condition?
1. What function do you use to ignore errors in block of code?
1. What's the main difference between `tryCatch()` and `withCallingHandlers()`?
1. Why might you want to create a custom error object?
### Outline {-}
* Section \@ref(signalling-conditions) introduces the basic tools for
signalling conditions, and discusses when it is appropriate to use each type.
* Section \@ref(ignoring-conditions) teaches you about the simplest tools for
handling conditions: functions like `try()` and `suppressMessages()` that
swallow conditions and prevent them from getting to the top level.
* Section \@ref(handling-conditions) introduces the condition __object__, and
the two fundamental tools of condition handling: `tryCatch()` for error
conditions, and `withCallingHandlers()` for everything else.
* Section \@ref(custom-conditions) shows you how to extend the built-in
condition objects to store useful data that condition handlers can use to
make more informed decisions.
* Section \@ref(condition-applications) closes out the chapter with a grab bag
of practical applications based on the low-level tools found in earlier
sections.
### Prerequisites
As well as base R functions, this chapter uses condition signalling and handling functions from [rlang](https://rlang.r-lib.org).
```{r setup}
library(rlang)
```
## Signalling conditions
\index{conditions!signalling}
\index{interrupts}
There are three conditions that you can signal in code: errors, warnings, and messages.
* Errors are the most severe; they indicate that there is no way for a function
to continue and execution must stop.
* Warnings fall somewhat in between errors and message, and typically indicate
that something has gone wrong but the function has been able to at least
partially recover.
* Messages are the mildest; they are way of informing users that some action
has been performed on their behalf.
There is a final condition that can only be generated interactively: an interrupt, which indicates that the user has interrupted execution by pressing Escape, Ctrl + Break, or Ctrl + C (depending on the platform).
Conditions are usually displayed prominently, in a bold font or coloured red, depending on the R interface. You can tell them apart because errors always start with "Error", warnings with "Warning" or "Warning message", and messages with nothing.
```{r, error = TRUE}
stop("This is what an error looks like")
warning("This is what a warning looks like")
message("This is what a message looks like")
```
The following three sections describe errors, warnings, and messages in more detail.
### Errors
\index{errors}
\indexc{stop()}
\indexc{abort()}
In base R, errors are signalled, or __thrown__, by `stop()`:
```{r, error = TRUE}
f <- function() g()
g <- function() h()
h <- function() stop("This is an error!")
f()
```
By default, the error message includes the call, but this is typically not useful (and recapitulates information that you can easily get from `traceback()`), so I think it's good practice to use `call. = FALSE`[^trailing-dot]:
[^trailing-dot]: The trailing `.` in `call.` is a peculiarity of `stop()`; don't read anything into it.
```{r, error = TRUE}
h <- function() stop("This is an error!", call. = FALSE)
f()
```
The rlang equivalent to `stop()`, `rlang::abort()`, does this automatically. We'll use `abort()` throughout this chapter, but we won't get to its most compelling feature, the ability to add additional metadata to the condition object, until we're near the end of the chapter.
```{r, error = TRUE}
h <- function() abort("This is an error!")
f()
```
(NB: `stop()` pastes together multiple inputs, while `abort()` does not. To create complex error messages with abort, I recommend using `glue::glue()`. This allows us to use other arguments to `abort()` for useful features that you'll learn about in Section \@ref(custom-conditions).)
The best error messages tell you what is wrong and point you in the right direction to fix the problem. Writing good error messages is hard because errors usually occur when the user has a flawed mental model of the function. As a developer, it's hard to imagine how the user might be thinking incorrectly about your function, and thus it's hard to write a message that will steer the user in the correct direction. That said, the tidyverse style guide discusses a few general principles that we have found useful: <http://style.tidyverse.org/error-messages.html>.
### Warnings
\index{warnings}
Warnings, signalled by `warning()`, are weaker than errors: they signal that something has gone wrong, but the code has been able to recover and continue. Unlike errors, you can have multiple warnings from a single function call:
```{r}
fw <- function() {
cat("1\n")
warning("W1")
cat("2\n")
warning("W2")
cat("3\n")
warning("W3")
}
```
By default, warnings are cached and printed only when control returns to the top level:
```{r, eval = FALSE}
fw()
#> 1
#> 2
#> 3
#> Warning messages:
#> 1: In f() : W1
#> 2: In f() : W2
#> 3: In f() : W3
```
\index{options!warn@\texttt{warn}}
You can control this behaviour with the `warn` option:
* To make warnings appear immediately, set `options(warn = 1)`.
* To turn warnings into errors, set `options(warn = 2)`. This is usually
the easiest way to debug a warning, as once it's an error you can
use tools like `traceback()` to find the source.
* Restore the default behaviour with `options(warn = 0)`.
Like `stop()`, `warning()` also has a call argument. It is slightly more useful (since warnings are often more distant from their source), but I still generally suppress it with `call. = FALSE`. Like `rlang::abort()`, the rlang equivalent of `warning()`, `rlang::warn()`, also suppresses the `call.` by default.
Warnings occupy a somewhat challenging place between messages ("you should know about this") and errors ("you must fix this!"), and it's hard to give precise advice on when to use them. Generally, be restrained, as warnings are easy to miss if there's a lot of other output, and you don't want your function to recover too easily from clearly invalid input. In my opinion, base R tends to overuse warnings, and many warnings in base R would be better off as errors. For example, I think these warnings would be more helpful as errors:
```{r}
formals(1)
file.remove("this-file-doesn't-exist")
lag(1:3, k = 1.5)
as.numeric(c("18", "30", "50+", "345,678"))
```
There are only a couple of cases where using a warning is clearly appropriate:
* When you __deprecate__ a function you want to allow older code to continue
to work (so ignoring the warning is OK) but you want to encourage the user
to switch to a new function.
* When you are reasonably certain you can recover from a problem:
If you were 100% certain that you could fix the problem, you wouldn't need
any message; if you were more uncertain that you could correctly fix the
issue, you'd throw an error.
Otherwise use warnings with restraint, and carefully consider if an error would be more appropriate.
### Messages
\index{messages}
\indexc{cat()}
\indexc{packageStartupMessage()}
Messages, signalled by `message()`, are informational; use them to tell the user that you've done something on their behalf. Good messages are a balancing act: you want to provide just enough information so the user knows what's going on, but not so much that they're overwhelmed.
`message()`s are displayed immediately and do not have a `call.` argument:
```{r}
fm <- function() {
cat("1\n")
message("M1")
cat("2\n")
message("M2")
cat("3\n")
message("M3")
}
fm()
```
Good places to use a message are:
* When a default argument requires some non-trivial amount of computation
and you want to tell the user what value was used. For example, ggplot2
reports the number of bins used if you don't supply a `binwidth`.
* In functions that are called primarily for their side-effects which would
otherwise be silent. For example, when writing files to disk, calling a web
API, or writing to a database, it's useful to provide regular status messages
telling the user what's happening.
* When you're about to start a long running process with no
intermediate output. A progress bar (e.g. with
[progress](https://github.com/r-lib/progress)) is better, but a message
is a good place to start.
* When writing a package, you sometimes want to display a message when
your package is loaded (i.e. in `.onAttach()`); here you must use
`packageStartupMessage()`.
Generally any function that produces a message should have some way to suppress it, like a `quiet = TRUE` argument. It is possible to suppress all messages with `suppressMessages()`, as you'll learn shortly, but it is nice to also give finer grained control.
It's important to compare `message()` to the closely related `cat()`. In terms of usage and result, they appear quite similar[^cat]:
[^cat]: But note that `cat()` requires an explicit trailing `"\n"` to print a new line.
```{r}
cat("Hi!\n")
message("Hi!")
```
However, the _purposes_ of `cat()` and `message()` are different. Use `cat()` when the primary role of the function is to print to the console, like `print()` or `str()` methods. Use `message()` as a side-channel to print to the console when the primary purpose of the function is something else. In other words, `cat()` is for when the user _asks_ for something to be printed and `message()` is for when the developer _elects_ to print something.
### Exercises
1. Write a wrapper around `file.remove()` that throws an error if the file
to be deleted does not exist.
1. What does the `appendLF` argument to `message()` do? How is it related to
`cat()`?
## Ignoring conditions
\index{conditions!muffling}
\indexc{try()}
\indexc{suppressWarnings()}
\indexc{suppressMessages()}
The simplest way of handling conditions in R is to simply ignore them:
* Ignore errors with `try()`.
* Ignore warnings with `suppressWarnings()`.
* Ignore messages with `suppressMessages()`.
These functions are heavy handed as you can't use them to suppress a single type of condition that you know about, while allowing everything else to pass through. We'll come back to that challenge later in the chapter.
`try()` allows execution to continue even after an error has occurred. Normally if you run a function that throws an error, it terminates immediately and doesn't return a value:
```{r, error = TRUE}
f1 <- function(x) {
log(x)
10
}
f1("x")
```
However, if you wrap the statement that creates the error in `try()`, the error message will be displayed[^silent] but execution will continue:
[^silent]: You can suppress the message with `try(..., silent = TRUE)`.
```{r, eval = FALSE}
f2 <- function(x) {
try(log(x))
10
}
f2("a")
#> Error in log(x) : non-numeric argument to mathematical function
#> [1] 10
```
It is possible, but not recommended, to save the result of `try()` and perform different actions based on whether or not the code succeeded or failed[^try-error]. Instead, it is better to use `tryCatch()` or a higher-level helper; you'll learn about those shortly.
A simple, but useful, pattern is to do assignment inside the call: this lets you define a default value to be used if the code does not succeed. This works because the argument is evaluated in the calling environment, not inside the function. (See Section \@ref(promises) for more details.)
[^try-error]: You can tell if the expression failed because the result will have class `try-error`.
```{r, eval = FALSE}
default <- NULL
try(default <- read.csv("possibly-bad-input.csv"), silent = TRUE)
```
`suppressWarnings()` and `suppressMessages()` suppress all warnings and messages. Unlike errors, messages and warnings don't terminate execution, so there may be multiple warnings and messages signalled in a single block.
```{r}
suppressWarnings({
warning("Uhoh!")
warning("Another warning")
1
})
suppressMessages({
message("Hello there")
2
})
suppressWarnings({
message("You can still see me")
3
})
```
## Handling conditions
\index{errors!catching}
\index{conditions!handling}
\indexc{tryCatch()}
\indexc{withCallingHandlers()}
Every condition has default behaviour: errors stop execution and return to the top level, warnings are captured and displayed in aggregate, and messages are immediately displayed. Condition __handlers__ allow us to temporarily override or supplement the default behaviour.
Two functions, `tryCatch()` and `withCallingHandlers()`, allow us to register handlers, functions that take the signalled condition as their single argument. The registration functions have the same basic form:
```{r, eval = FALSE}
tryCatch(
error = function(cnd) {
# code to run when error is thrown
},
code_to_run_while_handlers_are_active
)
withCallingHandlers(
warning = function(cnd) {
# code to run when warning is signalled
},
message = function(cnd) {
# code to run when message is signalled
},
code_to_run_while_handlers_are_active
)
```
They differ in the type of handlers that they create:
* `tryCatch()` defines __exiting__ handlers; after the condition is handled,
control returns to the context where `tryCatch()` was called. This makes
`tryCatch()` most suitable for working with errors and interrupts, as these
have to exit anyway.
* `withCallingHandlers()` defines __calling__ handlers; after the condition
is captured control returns to the context where the condition was signalled.
This makes it most suitable for working with non-error conditions.
But before we can learn about and use these handlers, we need to talk a little bit about condition __objects__. These are created implicitly whenever you signal a condition, but become explicit inside the handler.
### Condition objects
\index{conditions!objects}
\indexc{catch\_cnd()}
So far we've just signalled conditions, and not looked at the objects that are created behind the scenes. The easiest way to see a condition object is to catch one from a signalled condition. That's the job of `rlang::catch_cnd()`:
```{r}
cnd <- catch_cnd(stop("An error"))
str(cnd)
```
Built-in conditions are lists with two elements:
* `message`, a length-1 character vector containing the text to display to a user.
To extract the message, use `conditionMessage(cnd)`.
* `call`, the call which triggered the condition. As described above, we don't
use the call, so it will often be `NULL`. To extract it, use
`conditionCall(cnd)`.
Custom conditions may contain other components, which we'll discuss in Section \@ref(custom-conditions).
Conditions also have a `class` attribute, which makes them S3 objects. We won't discuss S3 until Chapter \@ref(s3), but fortunately, even if you don't know about S3, condition objects are quite simple. The most important thing to know is that the `class` attribute is a character vector, and it determines which handlers will match the condition.
### Exiting handlers
\indexc{tryCatch()}
\index{handlers!exiting}
`tryCatch()` registers exiting handlers, and is typically used to handle error conditions. It allows you to override the default error behaviour. For example, the following code will return `NA` instead of throwing an error:
```{r}
f3 <- function(x) {
tryCatch(
error = function(cnd) NA,
log(x)
)
}
f3("x")
```
If no conditions are signalled, or the class of the signalled condition does not match the handler name, the code executes normally:
```{r}
tryCatch(
error = function(cnd) 10,
1 + 1
)
tryCatch(
error = function(cnd) 10,
{
message("Hi!")
1 + 1
}
)
```
The handlers set up by `tryCatch()` are called __exiting__ handlers because after the condition is signalled, control passes to the handler and never returns to the original code, effectively meaning that the code exits:
```{r}
tryCatch(
message = function(cnd) "There",
{
message("Here")
stop("This code is never run!")
}
)
```
The protected code is evaluated in the environment of `tryCatch()`, but the handler code is not, because the handlers are functions. This is important to remember if you're trying to modify objects in the parent environment.
The handler functions are called with a single argument, the condition object. I call this argument `cnd`, by convention. This value is only moderately useful for the base conditions because they contain relatively little data. It's more useful when you make your own custom conditions, as you'll see shortly.
```{r}
tryCatch(
error = function(cnd) {
paste0("--", conditionMessage(cnd), "--")
},
stop("This is an error")
)
```
`tryCatch()` has one other argument: `finally`. It specifies a block of code (not a function) to run regardless of whether the initial expression succeeds or fails. This can be useful for clean up, like deleting files, or closing connections. This is functionally equivalent to using `on.exit()` (and indeed that's how it's implemented) but it can wrap smaller chunks of code than an entire function.
\indexc{on.exit()}
```{r}
path <- tempfile()
tryCatch(
{
writeLines("Hi!", path)
# ...
},
finally = {
# always run
unlink(path)
}
)
```
### Calling handlers
\index{handlers!calling}
\indexc{withCallingHandlers()}
The handlers set up by `tryCatch()` are called exiting handlers, because they cause code to exit once the condition has been caught. By contrast, `withCallingHandlers()` sets up __calling__ handlers: code execution continues normally once the handler returns. This tends to make `withCallingHandlers()` a more natural pairing with the non-error conditions. Exiting and calling handlers use "handler" in slighty different senses:
* An exiting handler handles a signal like you handle a problem; it makes the
problem go away.
* A calling handler handles a signal like you handle a car; the car still
exists.
Compare the results of `tryCatch()` and `withCallingHandlers()` in the example below. The messages are not printed in the first case, because the code is terminated once the exiting handler completes. They are printed in the second case, because a calling handler does not exit.
```{r}
tryCatch(
message = function(cnd) cat("Caught a message!\n"),
{
message("Someone there?")
message("Why, yes!")
}
)
withCallingHandlers(
message = function(cnd) cat("Caught a message!\n"),
{
message("Someone there?")
message("Why, yes!")
}
)
```
Handlers are applied in order, so you don't need to worry about getting caught in an infinite loop. In the following example, the `message()` signalled by the handler doesn't also get caught:
```{r}
withCallingHandlers(
message = function(cnd) message("Second message"),
message("First message")
)
```
(But beware if you have multiple handlers, and some handlers signal conditions that could be captured by another handler: you'll need to think through the order carefully.)
The return value of a calling handler is ignored because the code continues to execute after the handler completes; where would the return value go? That means that calling handlers are only useful for their side-effects.
\index{conditions!muffling}
\indexc{cnd\_muffle()}
One important side-effect unique to calling handlers is the ability to __muffle__ the signal. By default, a condition will continue to propagate to parent handlers, all the way up to the default handler (or an exiting handler, if provided):
```{r}
# Bubbles all the way up to default handler which generates the message
withCallingHandlers(
message = function(cnd) cat("Level 2\n"),
withCallingHandlers(
message = function(cnd) cat("Level 1\n"),
message("Hello")
)
)
# Bubbles up to tryCatch
tryCatch(
message = function(cnd) cat("Level 2\n"),
withCallingHandlers(
message = function(cnd) cat("Level 1\n"),
message("Hello")
)
)
```
If you want to prevent the condition "bubbling up" but still run the rest of the code in the block, you need to explicitly muffle it with `rlang::cnd_muffle()`:
```{r}
# Muffles the default handler which prints the messages
withCallingHandlers(
message = function(cnd) {
cat("Level 2\n")
cnd_muffle(cnd)
},
withCallingHandlers(
message = function(cnd) cat("Level 1\n"),
message("Hello")
)
)
# Muffles level 2 handler and the default handler
withCallingHandlers(
message = function(cnd) cat("Level 2\n"),
withCallingHandlers(
message = function(cnd) {
cat("Level 1\n")
cnd_muffle(cnd)
},
message("Hello")
)
)
```
### Call stacks
\index{call stacks}
\indexc{cnd\_muffle()}
To complete the section, there are some important differences between the call stacks of exiting and calling handlers. These differences are generally not important but I'm including them here because I've occasionally found them useful, and don't want to forget about them!
It's easiest to see the difference by setting up a small example that uses `lobstr::cst()`:
```{r}
f <- function() g()
g <- function() h()
h <- function() message("!")
```
Calling handlers are called in the context of the call that signalled the condition:
```{r}
withCallingHandlers(f(), message = function(cnd) {
lobstr::cst()
cnd_muffle(cnd)
})
```
Whereas exiting handlers are called in the context of the call to `tryCatch()`:
```{r}
tryCatch(f(), message = function(cnd) lobstr::cst())
```
### Exercises
1. What extra information does the condition generated by `abort()` contain
compared to the condition generated by `stop()` i.e. what's the difference
between these two objects? Read the help for `?abort` to learn more.
```{r, eval = FALSE}
catch_cnd(stop("An error"))
catch_cnd(abort("An error"))
```
1. Predict the results of evaluating the following code
```{r, eval = FALSE}
show_condition <- function(code) {
tryCatch(
error = function(cnd) "error",
warning = function(cnd) "warning",
message = function(cnd) "message",
{
code
NULL
}
)
}
show_condition(stop("!"))
show_condition(10)
show_condition(warning("?!"))
show_condition({
10
message("?")
warning("?!")
})
```
1. Explain the results of running this code:
```{r}
withCallingHandlers(
message = function(cnd) message("b"),
withCallingHandlers(
message = function(cnd) message("a"),
message("c")
)
)
```
1. Read the source code for `catch_cnd()` and explain how it works.
1. How could you rewrite `show_condition()` to use a single handler?
## Custom conditions {#custom-conditions}
\index{conditions!custom}
\indexc{abort()}
One of the challenges of error handling in R is that most functions generate one of the built-in conditions, which contain only a `message` and a `call`. That means that if you want to detect a specific type of error, you can only work with the text of the error message. This is error prone, not only because the message might change over time, but also because messages can be translated into other languages.
Fortunately R has a powerful, but little used feature: the ability to create custom conditions that can contain additional metadata. Creating custom conditions is a little fiddly in base R, but `rlang::abort()` makes it very easy as you can supply a custom `.subclass` and additional metadata.
The following example shows the basic pattern. I recommend using the following call structure for custom conditions. This takes advantage of R's flexible argument matching so that the name of the type of error comes first, followed by the user-facing text, followed by custom metadata.
```{r, error = TRUE}
abort(
"error_not_found",
message = "Path `blah.csv` not found",
path = "blah.csv"
)
```
Custom conditions work just like regular conditions when used interactively, but allow handlers to do much more.
### Motivation
To explore these ideas in more depth, let's take `base::log()`. It does the minimum when throwing errors caused by invalid arguments:
```{r, error = TRUE}
log(letters)
log(1:10, base = letters)
```
I think we can do better by being explicit about which argument is the problem (i.e. `x` or `base`), and saying what the problematic input is (not just what it isn't).
```{r}
my_log <- function(x, base = exp(1)) {
if (!is.numeric(x)) {
abort(paste0(
"`x` must be a numeric vector; not ", typeof(x), "."
))
}
if (!is.numeric(base)) {
abort(paste0(
"`base` must be a numeric vector; not ", typeof(base), "."
))
}
base::log(x, base = base)
}
```
This gives us:
```{r, error = TRUE}
my_log(letters)
my_log(1:10, base = letters)
```
This is an improvement for interactive usage as the error messages are more likely to guide the user towards a correct fix. However, they're no better if you want to programmatically handle the errors: all the useful metadata about the error is jammed into a single string.
### Signalling
\index{conditions!signalling}
Let's build some infrastructure to improve this situation, We'll start by providing a custom `abort()` function for bad arguments. This is a little over-generalised for the example at hand, but it reflects common patterns that I've seen across other functions. The pattern is fairly simple. We create a nice error message for the user, using `glue::glue()`, and store metadata in the condition call for the developer.
```{r}
abort_bad_argument <- function(arg, must, not = NULL) {
msg <- glue::glue("`{arg}` must {must}")
if (!is.null(not)) {
not <- typeof(not)
msg <- glue::glue("{msg}; not {not}.")
}
abort("error_bad_argument",
message = msg,
arg = arg,
must = must,
not = not
)
}
```
\newpage
::: base
If you want to throw a custom error without adding a dependency on rlang, you can create a condition object "by hand" and then pass it to `stop()`:
```{r, eval = FALSE}
stop_custom <- function(.subclass, message, call = NULL, ...) {
err <- structure(
list(
message = message,
call = call,
...
),
class = c(.subclass, "error", "condition")
)
stop(err)
}
err <- catch_cnd(
stop_custom("error_new", "This is a custom error", x = 10)
)
class(err)
err$x
```
:::
We can now rewrite `my_log()` to use this new helper:
```{r}
my_log <- function(x, base = exp(1)) {
if (!is.numeric(x)) {
abort_bad_argument("x", must = "be numeric", not = x)
}
if (!is.numeric(base)) {
abort_bad_argument("base", must = "be numeric", not = base)
}
base::log(x, base = base)
}
```
`my_log()` itself is not much shorter, but is a little more meangingful, and it ensures that error messages for bad arguments are consistent across functions. It yields the same interactive error messages as before:
```{r, error = TRUE}
my_log(letters)
my_log(1:10, base = letters)
```
### Handling
\index{conditions!handling}
These structured condition objects are much easier to program with. The first place you might want to use this capability is when testing your function. Unit testing is not a subject of this book (see [R packages](http://r-pkgs.had.co.nz/) for details), but the basics are easy to understand. The following code captures the error, and then asserts it has the structure that we expect.
```{r, message = FALSE}
library(testthat)
err <- catch_cnd(my_log("a"))
expect_s3_class(err, "error_bad_argument")
expect_equal(err$arg, "x")
expect_equal(err$not, "character")
```
We can also use the class (`error_bad_argument`) in `tryCatch()` to only handle that specific error:
```{r}
tryCatch(
error_bad_argument = function(cnd) "bad_argument",
error = function(cnd) "other error",
my_log("a")
)
```
When using `tryCatch()` with multiple handlers and custom classes, the first handler to match any class in the signal's class vector is called, not the best match. For this reason, you need to make sure to put the most specific handlers first. The following code does not do what you might hope:
```{r}
tryCatch(
error = function(cnd) "other error",
error_bad_argument = function(cnd) "bad_argument",
my_log("a")
)
```
### Exercises
1. Inside a package, it's occasionally useful to check that a package is
installed before using it. Write a function that checks if a package is
installed (with `requireNamespace("pkg", quietly = FALSE))` and if not,
throws a custom condition that includes the package name in the metadata.
1. Inside a package you often need to stop with an error when something
is not right. Other packages that depend on your package might be
tempted to check these errors in their unit tests. How could you help
these packages to avoid relying on the error message which is part of
the user interface rather than the API and might change without notice?
## Applications {#condition-applications}
Now that you've learned the basic tools of R's condition system, it's time to dive into some applications. The goal of this section is not to show every possible usage of `tryCatch()` and `withCallingHandlers()` but to illustrate some common patterns that frequently crop up. Hopefully these will get your creative juices flowing, so when you encounter a new problem you can come up with a useful solution.
### Failure value
\indexc{try()}
There are a few simple, but useful, `tryCatch()` patterns based on returning a value from the error handler. The simplest case is a wrapper to return a default value if an error occurs:
```{r}
fail_with <- function(expr, value = NULL) {
tryCatch(
error = function(cnd) value,
expr
)
}
fail_with(log(10), NA_real_)
fail_with(log("x"), NA_real_)
```
A more sophisticated application is `base::try()`. Below, `try2()` extracts the essence of `base::try()`; the real function is more complicated in order to make the error message look more like what you'd see if `tryCatch()` wasn't used.
```{r}
try2 <- function(expr, silent = FALSE) {
tryCatch(
error = function(cnd) {
msg <- conditionMessage(cnd)
if (!silent) {
message("Error: ", msg)
}
structure(msg, class = "try-error")
},
expr
)
}
try2(1)
try2(stop("Hi"))
try2(stop("Hi"), silent = TRUE)
```
### Success and failure values {#try-success-failure}
We can extend this pattern to return one value if the code evaluates successfully (`success_val`), and another if it fails (`error_val`). This pattern just requires one small trick: evaluating the user supplied code, then `success_val`. If the code throws an error, we'll never get to `success_val` and will instead return `error_val`.
```{r}
foo <- function(expr) {
tryCatch(
error = function(cnd) error_val,
{
expr
success_val
}
)
}
```
We can use this to determine if an expression fails:
```{r}
does_error <- function(expr) {
tryCatch(
error = function(cnd) TRUE,
{
expr
FALSE
}
)
}
```
Or to capture any condition, like just `rlang::catch_cnd()`:
```{r, eval = FALSE}
catch_cnd <- function(expr) {
tryCatch(
condition = function(cnd) cnd,
{
expr
NULL
}
)
}
```
We can also use this pattern to create a `try()` variant. One challenge with `try()` is that it's slightly challenging to determine if the code succeeded or failed. Rather than returning an object with a special class, I think it's slightly nicer to return a list with two components `result` and `error`.
```{r}
safety <- function(expr) {
tryCatch(
error = function(cnd) {
list(result = NULL, error = cnd)
},
list(result = expr, error = NULL)
)
}
str(safety(1 + 10))
str(safety(stop("Error!")))
```
(This is closely related to `purrr::safely()`, a function operator, which we'll come back to in Section \@ref(safely).)
### Resignal
\index{options!warn@\texttt{warn}}
As well as returning default values when a condition is signalled, handlers can be used to make more informative error messages. One simple application is to make a function that works like `options(warn = 2)` for a single block of code. The idea is simple: we handle warnings by throwing an error:
```{r}
warning2error <- function(expr) {
withCallingHandlers(
warning = function(cnd) abort(conditionMessage(cnd)),
expr
)
}
```
```{r, error = TRUE}
warning2error({
x <- 2 ^ 4
warn("Hello")
})
```
You could write a similar function if you were trying to find the source of an annoying message. More on this in Section \@ref(non-error-failures).
<!--
Another common place where it's useful to add additional context dependent information. For example, you might have a function to download data from a remote website:
```{r}
download_data <- function(name) {
src <- paste0("http://awesomedata.com/", name, ".csv")
dst <- paste0("data/", name, ".csv")
tryCatch(
curl::curl_download(src, dst),
error = function(cnd) {
abort(
glue::glue("Failed to download remote data `{name}`"),
parent = c
)
}
)
}
```
There are two important ideas here:
* We rewrap `curl_download()`, which downloads the file, to provide context
specific to our function.
* We include the original error as the `parent` so that the original context is
still available.
-->
### Record
Another common pattern is to record conditions for later investigation. The new challenge here is that calling handlers are called only for their side-effects so we can't return values, but instead need to modify some object in place.
```{r}
catch_cnds <- function(expr) {
conds <- list()
add_cond <- function(cnd) {
conds <<- append(conds, list(cnd))
cnd_muffle(cnd)
}
withCallingHandlers(