From 502c9947affde62f81ef50cfbb7aa37b030f2b71 Mon Sep 17 00:00:00 2001
From: Yunfei Guo <yunfei.guo@bina.roche.com>
Date: Fri, 20 Jan 2017 13:41:24 -0800
Subject: [PATCH 1/2] rm unused code

---
 .../bina/varsim/tools/simulation/RandVCFgenerator.java   | 9 ---------
 1 file changed, 9 deletions(-)

diff --git a/src/main/java/com/bina/varsim/tools/simulation/RandVCFgenerator.java b/src/main/java/com/bina/varsim/tools/simulation/RandVCFgenerator.java
index 8f62c0de..4067541d 100644
--- a/src/main/java/com/bina/varsim/tools/simulation/RandVCFgenerator.java
+++ b/src/main/java/com/bina/varsim/tools/simulation/RandVCFgenerator.java
@@ -144,15 +144,6 @@ public void outputVcfRecord(BufferedWriter bw, Variant var, int geno0, int geno1
             throws IOException {
 
         //skip checking because it does not apparently harm to output nonATCGN ref and alt alleles
-        /*
-        // ignore ACTGN
-        String ref = var.getReferenceString().toUpperCase();
-        String alt = var.alternativeAlleleString().toUpperCase();
-
-        if (!ref.matches("[ACTGN]*") || (!var.isAltACTGN())) {
-            return; // don't output if it is not ACTGN
-        }
-        */
         bw.write(var.toString(geno0, geno1));
         bw.newLine();
     }

From 94f4e057fcbb156ccd66f8172d9d1e8c0425b692 Mon Sep 17 00:00:00 2001
From: Yunfei Guo <yunfei.guo@bina.roche.com>
Date: Fri, 20 Jan 2017 13:41:40 -0800
Subject: [PATCH 2/2] update pom for release

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index aa7c598e..f3be11bb 100644
--- a/pom.xml
+++ b/pom.xml
@@ -4,7 +4,7 @@
 
     <groupId>com.bina.varsim</groupId>
     <artifactId>varsim</artifactId>
-    <version>0.7.2</version>
+    <version>0.7.3</version>
     <packaging>jar</packaging>
 
     <name>varsim</name>