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Multi_read Fast5s #19

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vahidAK opened this issue Oct 3, 2019 · 2 comments
Open

Multi_read Fast5s #19

vahidAK opened this issue Oct 3, 2019 · 2 comments
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enhancement New feature or request

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@vahidAK
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vahidAK commented Oct 3, 2019

Hi,
Is there any possibility that you update DeepSignal to accepts multi-read fast5 files?
Because, when the number of samples is high, it is painful to convert multi-read files to single read and produce hundreds of millions of files.
Thanks,
Vahid.
@PengNi
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PengNi commented Oct 4, 2019

Hi @vahidAK ,

Thanks for your interest. We are already working on it. However it could take months. Because deepsignal depends on tombo to preprocess the fast5 files. And tombo doesn't support multi-read fast5 files either.

We are considering to wrap the core code of tombo into deepsignal. I'll let you know when we finish the upgrade.

Best,
Peng

@vahidAK
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vahidAK commented Oct 4, 2019

Hi @PengNi ,
Thanks for your kind response. I am looking forward to hearing about the new update.

@PengNi PengNi added the enhancement New feature or request label Oct 12, 2019
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@PengNi @vahidAK