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upgrade arb-bio to version 7 #49725

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KasperSkytte opened this issue Aug 1, 2024 · 4 comments
Open

upgrade arb-bio to version 7 #49725

KasperSkytte opened this issue Aug 1, 2024 · 4 comments

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@KasperSkytte
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I hereby request an upgrade of arb-bio from version 6.0 to version 7.0, which has now existed for a few years. For example for Ubuntu, there is only native support until Ubuntu20, Ubuntu22 is no longer compatible. Request also posted here epruesse/ARB#2

@KasperSkytte
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assign @epruesse

@KasperSkytte
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KasperSkytte commented Aug 1, 2024

I've made a working, but rather naive, apptainer container, which we have been using for a while as an alternative, definition here https://github.com/cmc-aau/biocloud-software/tree/main/containers/apptainer/arb, but maybe it needs some tweaking too. It simply runs the install script in a base ubuntu 20 image

@KasperSkytte
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update: I have started on the matter myself on this fork. I have finally solved the dependency tree manually, but am experiencing other issues when building and testing locally, issue here.

@KasperSkytte
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@epruesse do you have time to take a look at this soon? It's still very relevant and a big issue for us at least, native arb install is broken with ubuntu20 and later.

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