poly-v0.21.2

Changelog

• f058b7b update copyright year.
• e93b669 Support multiple references separated by newline in rebase file (#285)
• 9fbdee2 fasta rework (#284)
• 07821a7 transform: performance and test upgrades (#283)
• ab57dd0 Move enzymeMap to package level, compile regular expressions only once (#273)
• 8ed8b56 Remove unnecessary conversions (#275)
• cff6f9f Precompile most of the regular expressions (#274)
• 80bfcb1 created config for gitpod. (#266)

poly-v0.21.1

Changelog

• 59ce2fe fix: Use SliceStable to sort potential changes (#265)

poly-v0.21.0

Changelog

• eba6b72 Replaced the Seqhash sequencetype with Struct type argument instead of a plain string.. (#264)

poly-v0.20.0

Changelog

• 1a24114 genbank parsing, IO error checking, adding test coverage, and discord notifications. (#259)
• 3ea652d Notify Social Media (#252)
• 8a5aec4 created non-third party coverage badge. (#249)
• 4375f6b Increase the coverage of the codon package (#246)
• 1574749 Increase coverage for the variants package (#245)
• 359da2c Fixing Readme install instruction (#242)

BREAKING CHANGES

v0.2.0 introduces the follow breaking change(s).

• all parse functions now take structs that satisfy the io.reader interface as input.

poly-v0.19.0

Changelog

• 4375f6b Increase the coverage of the codon package (#246)
• 1574749 Increase coverage for the variants package (#245)
• 14f0a61 IO Interface refactor (#227)

BREAKING CHANGES

PR #227 introduces several breaking changes.

• IO has been overhauled such that each supported file format has its own dedicated struct
• command line utility has been deprecated and will not be supported going forward
• deprecated GetCodingRegions

poly-v0.17.1

Changelog

• 5727c93 Add GcContent function to barcodes (#214)
• d0e7359 add linux/osx/windows and some editor ignore templates (#231)
• c7ffed4 minor codon package cleanup (#232)
• 7ac940d update copyright year (#233)

poly-v0.16.1

Changelog

• 15cd727 Get next overhang (#215)
• f35062c Handle invalid amino acids in codon optimization (#228)
• 902f46d Update ROADMAP.md

poly-v0.16.0

Changelog

9eaa943 Pcr (#223) <- added PCR simulations

poly-v0.15.0

Changelog

1f70caa Refactoring docs to be more easily navigable. (#219)

BREAKING CHANGES

poly.go which contains our core Sequence struct has been moved to it's own directory in the io subpackage.

This should be an easy update and most of you have editors that will fix this for you without you even noticing but if you're a hardcore VIM purest with no add-ons take note.

poly-v0.14.0

Changelog

27152b0 Add fragmentation to synthesis directory (#198)

BREAKING CHANGES

Codon optimization has been moved to the synthesis sub-package.