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Genbank location parser breaks on parsing this location. #384

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TimothyStiles opened this issue Oct 7, 2023 · 1 comment
Closed

Genbank location parser breaks on parsing this location. #384

TimothyStiles opened this issue Oct 7, 2023 · 1 comment
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bug Something isn't working hard A major or complex undertaking help wanted Extra attention is needed high priority High priority - something is broken or missing that is critical for users or developers.

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@TimothyStiles
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Describe the bug

Genbank.Read panics when trying to read this specific location line

     misc_RNA        join(complement(5306942..5307394),
                     complement(5304401..5305029),complement(5303328..5303393),
                     complement(5301928..5302004))

Severity of the bug

Keeps us from parsing refseq human genome

Steps to reproduce

Steps to reproduce the behavior:
Will update with better steps but you should be able to create a new genbank file with this location and run it through genbank.Read to reproduce.

Expected behavior

Will not panic and be able to parse location string effectively.

Screenshots

Screen Shot 2023-10-06 at 7 14 50 PM

Client information

  • OS: Mac OSX 0.15.7
  • Golang version: 1.21
  • poly version v0.27.1
@TimothyStiles TimothyStiles added bug Something isn't working needs-triage An issue that needs to be triaged help wanted Extra attention is needed high priority High priority - something is broken or missing that is critical for users or developers. hard A major or complex undertaking and removed needs-triage An issue that needs to be triaged labels Oct 7, 2023
@TimothyStiles
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fixed as of #385

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@TimothyStiles