DESCRIPTION

Package: derfinder
Type: Package
Title: Annotation-agnostic differential expression analysis of RNA-seq
    data at base-pair resolution
Version: 1.3.3
Date: 2015-06-16
Authors@R: c(person("Leonardo", "Collado-Torres", role = c("aut", "cre"), email
    = "lcollado@jhu.edu"), person(c("Alyssa", "C."), "Frazee", role = c("aut"),
    email = "alyssa.frazee@gmail.com"), person(c("Andrew", "E."), "Jaffe",
    role = "aut", email = "andrew.jaffe@libd.org"), person(c("Jeffrey", "T."),
    "Leek", role = c("aut", "ths"), email = "jtleek@gmail.com"))
Depends:
    R(>= 3.2)
Imports:
    AnnotationDbi (>= 1.27.9),
    BiocParallel,
    bumphunter (>= 1.7.6),
    derfinderHelper (>= 1.1.0),
    GenomeInfoDb (>= 1.3.3),
    GenomicAlignments,
    GenomicFeatures,
    GenomicFiles,
    GenomicRanges (>= 1.17.40),
    Hmisc,
    IRanges (>= 1.99.28),
    qvalue (>= 1.99.0),
    Rsamtools,
    rtracklayer,
    S4Vectors (>= 0.2.3)
Suggests:
    biovizBase,
    devtools (>= 1.6),
    derfinderData (>= 0.99.0),
    ggplot2,
    knitcitations (>= 1.0.1),
    knitr (>= 1.6),
    knitrBootstrap (>= 0.9.0),
    rmarkdown (>= 0.3.3),
    testthat,
    TxDb.Hsapiens.UCSC.hg19.knownGene
VignetteBuilder: knitr
Description: This package provides functions for annotation-agnostic 
    differential expression analysis of RNA-seq data.
License: Artistic-2.0
LazyData: true
URL: https://github.com/lcolladotor/derfinder
BugReports: https://github.com/lcolladotor/derfinder/issues
biocViews: DifferentialExpression, Sequencing, RNASeq, Software