More restriction enzyme sites of Arima than Juicer provided, how to modified juicer.sh

[QianghuiZhu]

Hi!
Juicer + 3D-DNA + juicebox is a great pipeline.
I have run successfully for DpnII. But for Arima, I have some questions.
I downloaded Hi-C data from VGP, and their Arima provided four restriction enzyme sites (GATC,GANTC,CTNAG,TTAA). But I found that generate_site_positions.py and juicer.sh only inculde two of these sites.

So, My questions are:
Q1: May I modify generate_site_positions.py line 56 to "'Arima' : [ 'GATC', 'GANTC', 'CTNAG', 'TTAA' ]," to contain all of four sites?
Q2: If Q1 is yes, what should I modify in juicer.sh?
Q3: Any other need to be modified or noticed?

Best!

[AlcaArctica]

I have the same question. Has there been any resolution?

[QianghuiZhu]

I have the same question. Has there been any resolution?

It seems that SALSA2 could provide four restriction enzyme sites.

[sa501428]

Hi! Yes you can edit it and submit a pull request. (And of course, you can always edit downloaded code internally)

[QianghuiZhu]

Hi! Yes you can edit it and submit a pull request. (And of course, you can always edit downloaded code internally)

Thanks for this.
But I do not know where should be edit. I do not clear that how to modified juicer.sh and other scripts.
Best!