From 32336457ef91c3f4b08d7ba1c429d1589c892ce4 Mon Sep 17 00:00:00 2001
From: nchernia <nchernia@gmail.com>
Date: Sun, 18 Jun 2017 12:35:52 +0200
Subject: [PATCH] adding ligation and thread flags

---
 CPU/juicer.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CPU/juicer.sh b/CPU/juicer.sh
index 7c496c4..1f48ca3 100755
--- a/CPU/juicer.sh
+++ b/CPU/juicer.sh
@@ -123,7 +123,7 @@ printHelpAndExit() {
     exit "$1"
 }
 
-while getopts "d:g:R:a:hrs:p:y:z:S:D:x" opt; do
+while getopts "d:g:R:a:hrs:p:y:z:S:D:xt:b:" opt; do
     case $opt in
 	g) genomeID=$OPTARG ;;
 	h) printHelpAndExit 0;;