From 02a7e9447e49dc678658a6a466e2f2fdda6f7331 Mon Sep 17 00:00:00 2001 From: Gezim Date: Tue, 9 May 2017 22:50:38 +0200 Subject: [PATCH 01/36] Made clustering package and its class using the same name, fixed #7 --- .../spark/ml/clustering/RDFByModularityClustering.scala | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala index 3a03781..b78b2f1 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala @@ -3,9 +3,9 @@ package net.sansa_stack.examples.spark.ml.clustering import scala.collection.mutable import org.apache.spark.sql.SparkSession import org.apache.log4j.{ Level, Logger } -import net.sansa_stack.ml.spark.clustering.RDFByModularityClustering +import net.sansa_stack.ml.spark.clustering.{ RDFByModularityClustering => RDFByModularityClusteringAlg } -object RDFByModularityClusteringExample { +object RDFByModularityClustering { def main(args: Array[String]) = { if (args.length < 3) { @@ -37,7 +37,7 @@ object RDFByModularityClusteringExample { .getOrCreate() Logger.getRootLogger.setLevel(Level.ERROR) - RDFByModularityClustering(sparkSession.sparkContext, numIterations, graphFile, outputFile) + RDFByModularityClusteringAlg(sparkSession.sparkContext, numIterations, graphFile, outputFile) sparkSession.stop From 7d6a07cbc27ba4b761c923a0c7ca5fc7aeecea3b Mon Sep 17 00:00:00 2001 From: Gezim Date: Tue, 9 May 2017 22:52:59 +0200 Subject: [PATCH 02/36] Removed hardcoded parameter @TripleOps, fixed #3 --- .../net/sansa_stack/examples/spark/rdf/TripleOps.scala | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala index 082a92e..6ec7be9 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala @@ -14,12 +14,12 @@ object TripleOps { def main(args: Array[String]) = { - /* if (args.length < 1) { + if (args.length < 1) { System.err.println( "Usage: Triple Ops ") System.exit(1) - }*/ - val input = "src/main/resources/rdf.nt"//args(0)//"src/main/resources/rdf.nt" + } + val input = args(0) //"src/main/resources/rdf.nt" val optionsList = args.drop(1).map { arg => arg.dropWhile(_ == '-').split('=') match { case Array(opt, v) => (opt -> v) @@ -45,7 +45,7 @@ object TripleOps { import ops._ val triplesRDD = NTripleReader.load(sparkSession, new File(input)) - + val graph: TripleRDD = triplesRDD //Triples filtered by subject ( "http://dbpedia.org/resource/Charles_Dickens" ) From 5a6baa183d8d8c1530fec2feb79da62db00d2e31 Mon Sep 17 00:00:00 2001 From: Lorenz Buehmann Date: Wed, 10 May 2017 10:22:09 +0200 Subject: [PATCH 03/36] Added latest RDF layer dependency which fixes issue #2 --- pom.xml | 2 +- sansa-examples-spark/pom.xml | 9 ++++++++- .../examples/spark/query/Sparklify.scala | 18 ++++++++---------- .../examples/spark/rdf/PageRank.scala | 12 +++++++----- .../examples/spark/rdf/TripleOps.scala | 5 +++-- .../examples/spark/rdf/TripleReader.scala | 10 ++++++---- .../examples/spark/rdf/TripleWriter.scala | 4 +++- 7 files changed, 36 insertions(+), 24 deletions(-) diff --git a/pom.xml b/pom.xml index 6aa60ef..2058838 100644 --- a/pom.xml +++ b/pom.xml @@ -145,7 +145,7 @@ ${project.groupId} sansa-rdf-spark-bundle - 0.1.0 + 0.1.1-SNAPSHOT diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index 4b07b15..79649bb 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -54,7 +54,6 @@ ${project.groupId} sansa-owl-spark - 0.1.0-SNAPSHOT @@ -242,6 +241,14 @@ false + + + + + + + diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala index 649c401..d2a4d76 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala @@ -1,17 +1,15 @@ package net.sansa_stack.examples.spark.query -import java.io.File -import scala.collection.mutable -import org.apache.spark.sql.SparkSession +import java.net.URI + +import net.sansa_stack.query.spark.server.SparqlifyUtils3 +import net.sansa_stack.rdf.spark.io.NTripleReader import net.sansa_stack.rdf.spark.partition.core.RdfPartitionUtilsSpark -import net.sansa_stack.rdf.partition.sparqlify.SparqlifyUtils2 import net.sansa_stack.rdf.spark.sparqlify.QueryExecutionFactorySparqlifySpark import org.aksw.jena_sparql_api.server.utils.FactoryBeanSparqlServer -import net.sansa_stack.query.spark.server.SparqlifyUtils3 -import org.apache.jena.riot.RDFDataMgr -import org.apache.jena.riot.Lang -import org.apache.commons.io.IOUtils -import net.sansa_stack.rdf.spark.io.NTripleReader +import org.apache.spark.sql.SparkSession + +import scala.collection.mutable /* * Run SPARQL queries over Spark using Sparqlify approach. @@ -49,7 +47,7 @@ object Sparklify { .appName("Sparklify example (" + input + ")") .getOrCreate() - val graphRdd = NTripleReader.load(sparkSession, new File(input)) + val graphRdd = NTripleReader.load(sparkSession, URI.create(input)) val partitions = RdfPartitionUtilsSpark.partitionGraph(graphRdd) val rewriter = SparqlifyUtils3.createSparqlSqlRewriter(sparkSession, partitions) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/PageRank.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/PageRank.scala index 848836a..09db7d1 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/PageRank.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/PageRank.scala @@ -1,10 +1,12 @@ package net.sansa_stack.examples.spark.rdf -import java.io.File -import scala.collection.mutable -import org.apache.spark.sql.SparkSession -import net.sansa_stack.rdf.spark.model.JenaSparkGraphXOps import net.sansa_stack.rdf.spark.io.NTripleReader +import net.sansa_stack.rdf.spark.model.JenaSparkGraphXOps +import org.apache.spark.sql.SparkSession +import java.net.{URI => JavaURI} + + +import scala.collection.mutable /* * Computes the PageRank of Resources from an input .nt file. @@ -43,7 +45,7 @@ object PageRank { val ops = JenaSparkGraphXOps(sparkSession.sparkContext) import ops._ - val triplesRDD = NTripleReader.load(sparkSession, new File(input)) + val triplesRDD = NTripleReader.load(sparkSession, JavaURI.create(input)) val graph = makeGraph(triplesRDD) val pagerank = graph.pageRank(0.00001).vertices diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala index 082a92e..e6ce484 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala @@ -1,6 +1,7 @@ package net.sansa_stack.examples.spark.rdf -import java.io.File +import java.net.{URI => JavaURI} + import scala.collection.mutable import org.apache.spark.sql.SparkSession import net.sansa_stack.rdf.spark.model.JenaSparkRDDOps @@ -44,7 +45,7 @@ object TripleOps { val ops = JenaSparkRDDOps(sparkSession.sparkContext) import ops._ - val triplesRDD = NTripleReader.load(sparkSession, new File(input)) + val triplesRDD = NTripleReader.load(sparkSession, JavaURI.create(input)) val graph: TripleRDD = triplesRDD diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleReader.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleReader.scala index c67ffbd..e54d003 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleReader.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleReader.scala @@ -1,9 +1,11 @@ package net.sansa_stack.examples.spark.rdf -import java.io.File -import scala.collection.mutable -import org.apache.spark.sql.SparkSession +import java.net.URI + import net.sansa_stack.rdf.spark.io.NTripleReader +import org.apache.spark.sql.SparkSession + +import scala.collection.mutable object TripleReader { @@ -35,7 +37,7 @@ object TripleReader { .appName("Triple reader example (" + input + ")") .getOrCreate() - val triplesRDD = NTripleReader.load(sparkSession, new File(input)) + val triplesRDD = NTripleReader.load(sparkSession, URI.create(input)) triplesRDD.take(5).foreach(println(_)) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleWriter.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleWriter.scala index 6e20abd..f8f56b4 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleWriter.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleWriter.scala @@ -1,6 +1,8 @@ package net.sansa_stack.examples.spark.rdf import java.io.File +import java.net.URI + import scala.collection.mutable import org.apache.spark.sql.SparkSession import net.sansa_stack.rdf.spark.io.NTripleReader @@ -36,7 +38,7 @@ object TripleWriter { .appName("Triple writer example (" + input + ")") .getOrCreate() - val triplesRDD = NTripleReader.load(sparkSession, new File(input)) + val triplesRDD = NTripleReader.load(sparkSession, URI.create(input)) triplesRDD.saveAsTextFile(output) From 592a4f413f635e6249c4be6b9c77081882ae2f74 Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Thu, 11 May 2017 11:43:15 +0200 Subject: [PATCH 04/36] Apache 2.0 License --- LICENSE | 875 +++++++++++++------------------------------------------- 1 file changed, 201 insertions(+), 674 deletions(-) diff --git a/LICENSE b/LICENSE index 9cecc1d..8dada3e 100644 --- a/LICENSE +++ b/LICENSE @@ -1,674 +1,201 @@ - 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From 9fdb792e9b7b08f668b2d722c93c33ef763a8e10 Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Thu, 11 May 2017 11:44:06 +0200 Subject: [PATCH 05/36] Apache 2.0 License --- LICENSE | 875 +++++++++++++------------------------------------------- 1 file changed, 201 insertions(+), 674 deletions(-) diff --git a/LICENSE b/LICENSE index 9cecc1d..8dada3e 100644 --- a/LICENSE +++ b/LICENSE @@ -1,674 +1,201 @@ - GNU GENERAL PUBLIC LICENSE - Version 3, 29 June 2007 - - Copyright (C) 2007 Free Software Foundation, Inc. - Everyone is permitted to copy and distribute verbatim copies - of this license document, but changing it is not allowed. - - Preamble - - The GNU General Public License is a free, copyleft license for -software and other kinds of works. - - The licenses for most software and other practical works are designed -to take away your freedom to share and change the works. By contrast, -the GNU General Public License is intended to guarantee your freedom to -share and change all versions of a program--to make sure it remains free -software for all its users. We, the Free Software Foundation, use the -GNU General Public License for most of our software; it applies also to -any other work released this way by its authors. You can apply it to -your programs, too. - - When we speak of free software, we are referring to freedom, not -price. Our General Public Licenses are designed to make sure that you -have the freedom to distribute copies of free software (and charge for -them if you wish), that you receive source code or can get it if you -want it, that you can change the software or use pieces of it in new -free programs, and that you know you can do these things. - - To protect your rights, we need to prevent others from denying you -these rights or asking you to surrender the rights. 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No Surrender of Others' Freedom. - - If conditions are imposed on you (whether by court order, agreement or -otherwise) that contradict the conditions of this License, they do not -excuse you from the conditions of this License. If you cannot convey a -covered work so as to satisfy simultaneously your obligations under this -License and any other pertinent obligations, then as a consequence you may -not convey it at all. For example, if you agree to terms that obligate you -to collect a royalty for further conveying from those to whom you convey -the Program, the only way you could satisfy both those terms and this -License would be to refrain entirely from conveying the Program. - - 13. 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Disclaimer of Warranty. - - THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY -APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT -HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY -OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, -THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR -PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM -IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF -ALL NECESSARY SERVICING, REPAIR OR CORRECTION. - - 16. 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Interpretation of Sections 15 and 16. - - If the disclaimer of warranty and limitation of liability provided -above cannot be given local legal effect according to their terms, -reviewing courts shall apply local law that most closely approximates -an absolute waiver of all civil liability in connection with the -Program, unless a warranty or assumption of liability accompanies a -copy of the Program in return for a fee. - - END OF TERMS AND CONDITIONS - - How to Apply These Terms to Your New Programs - - If you develop a new program, and you want it to be of the greatest -possible use to the public, the best way to achieve this is to make it -free software which everyone can redistribute and change under these terms. - - To do so, attach the following notices to the program. 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If not, see . - -Also add information on how to contact you by electronic and paper mail. - - If the program does terminal interaction, make it output a short -notice like this when it starts in an interactive mode: - - {project} Copyright (C) {year} {fullname} - This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. - This is free software, and you are welcome to redistribute it - under certain conditions; type `show c' for details. - -The hypothetical commands `show w' and `show c' should show the appropriate -parts of the General Public License. Of course, your program's commands -might be different; for a GUI interface, you would use an "about box". - - You should also get your employer (if you work as a programmer) or school, -if any, to sign a "copyright disclaimer" for the program, if necessary. -For more information on this, and how to apply and follow the GNU GPL, see -. - - The GNU General Public License does not permit incorporating your program -into proprietary programs. If your program is a subroutine library, you -may consider it more useful to permit linking proprietary applications with -the library. If this is what you want to do, use the GNU Lesser General -Public License instead of this License. But first, please read -. + Apache License + Version 2.0, January 2004 + http://www.apache.org/licenses/ + + TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + + 1. Definitions. + + "License" shall mean the terms and conditions for use, reproduction, + and distribution as defined by Sections 1 through 9 of this document. + + "Licensor" shall mean the copyright owner or entity authorized by + the copyright owner that is granting the License. + + "Legal Entity" shall mean the union of the acting entity and all + other entities that control, are controlled by, or are under common + control with that entity. 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Unless required by applicable law or + agreed to in writing, Licensor provides the Work (and each + Contributor provides its Contributions) on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or + implied, including, without limitation, any warranties or conditions + of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A + PARTICULAR PURPOSE. You are solely responsible for determining the + appropriateness of using or redistributing the Work and assume any + risks associated with Your exercise of permissions under this License. + + 8. Limitation of Liability. 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We also recommend that a + file or class name and description of purpose be included on the + same "printed page" as the copyright notice for easier + identification within third-party archives. + + Copyright {yyyy} {name of copyright owner} + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. From 08637664a1778f7393457a94babd187f598c1024 Mon Sep 17 00:00:00 2001 From: Gezim Date: Thu, 11 May 2017 11:49:20 +0200 Subject: [PATCH 06/36] Added link to SDA Research Group --- LICENSE | 13 +------------ 1 file changed, 1 insertion(+), 12 deletions(-) diff --git a/LICENSE b/LICENSE index 8dada3e..2145088 100644 --- a/LICENSE +++ b/LICENSE @@ -175,18 +175,7 @@ END OF TERMS AND CONDITIONS - APPENDIX: How to apply the Apache License to your work. - - To apply the Apache License to your work, attach the following - boilerplate notice, with the fields enclosed by brackets "{}" - replaced with your own identifying information. (Don't include - the brackets!) The text should be enclosed in the appropriate - comment syntax for the file format. We also recommend that a - file or class name and description of purpose be included on the - same "printed page" as the copyright notice for easier - identification within third-party archives. - - Copyright {yyyy} {name of copyright owner} + Copyright, Smart Data Analytics Research Group (http://sda.tech) Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. From 21e6c612c35667615a8eeb847fea4bbaa3124d01 Mon Sep 17 00:00:00 2001 From: Gezim Date: Thu, 11 May 2017 12:01:22 +0200 Subject: [PATCH 07/36] Added link to SDA Research Group --- LICENSE | 13 +------------ 1 file changed, 1 insertion(+), 12 deletions(-) diff --git a/LICENSE b/LICENSE index 8dada3e..2145088 100644 --- a/LICENSE +++ b/LICENSE @@ -175,18 +175,7 @@ END OF TERMS AND CONDITIONS - APPENDIX: How to apply the Apache License to your work. - - To apply the Apache License to your work, attach the following - boilerplate notice, with the fields enclosed by brackets "{}" - replaced with your own identifying information. (Don't include - the brackets!) The text should be enclosed in the appropriate - comment syntax for the file format. We also recommend that a - file or class name and description of purpose be included on the - same "printed page" as the copyright notice for easier - identification within third-party archives. - - Copyright {yyyy} {name of copyright owner} + Copyright, Smart Data Analytics Research Group (http://sda.tech) Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. From 4fe55878a15f70acc36371a00b943697626c8315 Mon Sep 17 00:00:00 2001 From: Gezim Date: Thu, 11 May 2017 14:20:37 +0200 Subject: [PATCH 08/36] Made clustering package and its class using the same name, fixed #7 --- .../spark/ml/clustering/RDFByModularityClustering.scala | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala index 3a03781..c48d5cc 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala @@ -3,7 +3,7 @@ package net.sansa_stack.examples.spark.ml.clustering import scala.collection.mutable import org.apache.spark.sql.SparkSession import org.apache.log4j.{ Level, Logger } -import net.sansa_stack.ml.spark.clustering.RDFByModularityClustering +import net.sansa_stack.ml.spark.clustering.{ RDFByModularityClustering => RDFByModularityClusteringAlg } object RDFByModularityClusteringExample { @@ -37,7 +37,7 @@ object RDFByModularityClusteringExample { .getOrCreate() Logger.getRootLogger.setLevel(Level.ERROR) - RDFByModularityClustering(sparkSession.sparkContext, numIterations, graphFile, outputFile) + RDFByModularityClusteringAlg(sparkSession.sparkContext, numIterations, graphFile, outputFile) sparkSession.stop From 592e4de717c3510b5d5c6fefab90d87412b9a719 Mon Sep 17 00:00:00 2001 From: Gezim Date: Thu, 11 May 2017 14:22:20 +0200 Subject: [PATCH 09/36] Removed hardcoded parameter @TripleOps, fixed #3 --- .../net/sansa_stack/examples/spark/rdf/TripleOps.scala | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala index e6ce484..48ff050 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala @@ -1,6 +1,6 @@ package net.sansa_stack.examples.spark.rdf -import java.net.{URI => JavaURI} +import java.net.{ URI => JavaURI } import scala.collection.mutable import org.apache.spark.sql.SparkSession @@ -15,12 +15,12 @@ object TripleOps { def main(args: Array[String]) = { - /* if (args.length < 1) { + if (args.length < 1) { System.err.println( "Usage: Triple Ops ") System.exit(1) - }*/ - val input = "src/main/resources/rdf.nt"//args(0)//"src/main/resources/rdf.nt" + } + val input = args(0) //"src/main/resources/rdf.nt" val optionsList = args.drop(1).map { arg => arg.dropWhile(_ == '-').split('=') match { case Array(opt, v) => (opt -> v) @@ -46,7 +46,7 @@ object TripleOps { import ops._ val triplesRDD = NTripleReader.load(sparkSession, JavaURI.create(input)) - + val graph: TripleRDD = triplesRDD //Triples filtered by subject ( "http://dbpedia.org/resource/Charles_Dickens" ) From b3f49ac606ca294936d8c752e6810c045fb94f83 Mon Sep 17 00:00:00 2001 From: Lorenz Buehmann Date: Thu, 11 May 2017 15:19:31 +0200 Subject: [PATCH 10/36] Added latest RDF layer dependency which fixes issue #2 # Conflicts: # sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala --- pom.xml | 2 +- sansa-examples-spark/pom.xml | 9 ++++++++- .../examples/spark/query/Sparklify.scala | 18 ++++++++---------- .../examples/spark/rdf/PageRank.scala | 12 +++++++----- .../examples/spark/rdf/TripleOps.scala | 18 ++++++++---------- .../examples/spark/rdf/TripleReader.scala | 10 ++++++---- .../examples/spark/rdf/TripleWriter.scala | 4 +++- 7 files changed, 41 insertions(+), 32 deletions(-) diff --git a/pom.xml b/pom.xml index 6aa60ef..2058838 100644 --- a/pom.xml +++ b/pom.xml @@ -145,7 +145,7 @@ ${project.groupId} sansa-rdf-spark-bundle - 0.1.0 + 0.1.1-SNAPSHOT diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index 4b07b15..79649bb 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -54,7 +54,6 @@ ${project.groupId} sansa-owl-spark - 0.1.0-SNAPSHOT @@ -242,6 +241,14 @@ false + + + + + + + diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala index 649c401..d2a4d76 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala @@ -1,17 +1,15 @@ package net.sansa_stack.examples.spark.query -import java.io.File -import scala.collection.mutable -import org.apache.spark.sql.SparkSession +import java.net.URI + +import net.sansa_stack.query.spark.server.SparqlifyUtils3 +import net.sansa_stack.rdf.spark.io.NTripleReader import net.sansa_stack.rdf.spark.partition.core.RdfPartitionUtilsSpark -import net.sansa_stack.rdf.partition.sparqlify.SparqlifyUtils2 import net.sansa_stack.rdf.spark.sparqlify.QueryExecutionFactorySparqlifySpark import org.aksw.jena_sparql_api.server.utils.FactoryBeanSparqlServer -import net.sansa_stack.query.spark.server.SparqlifyUtils3 -import org.apache.jena.riot.RDFDataMgr -import org.apache.jena.riot.Lang -import org.apache.commons.io.IOUtils -import net.sansa_stack.rdf.spark.io.NTripleReader +import org.apache.spark.sql.SparkSession + +import scala.collection.mutable /* * Run SPARQL queries over Spark using Sparqlify approach. @@ -49,7 +47,7 @@ object Sparklify { .appName("Sparklify example (" + input + ")") .getOrCreate() - val graphRdd = NTripleReader.load(sparkSession, new File(input)) + val graphRdd = NTripleReader.load(sparkSession, URI.create(input)) val partitions = RdfPartitionUtilsSpark.partitionGraph(graphRdd) val rewriter = SparqlifyUtils3.createSparqlSqlRewriter(sparkSession, partitions) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/PageRank.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/PageRank.scala index 848836a..09db7d1 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/PageRank.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/PageRank.scala @@ -1,10 +1,12 @@ package net.sansa_stack.examples.spark.rdf -import java.io.File -import scala.collection.mutable -import org.apache.spark.sql.SparkSession -import net.sansa_stack.rdf.spark.model.JenaSparkGraphXOps import net.sansa_stack.rdf.spark.io.NTripleReader +import net.sansa_stack.rdf.spark.model.JenaSparkGraphXOps +import org.apache.spark.sql.SparkSession +import java.net.{URI => JavaURI} + + +import scala.collection.mutable /* * Computes the PageRank of Resources from an input .nt file. @@ -43,7 +45,7 @@ object PageRank { val ops = JenaSparkGraphXOps(sparkSession.sparkContext) import ops._ - val triplesRDD = NTripleReader.load(sparkSession, new File(input)) + val triplesRDD = NTripleReader.load(sparkSession, JavaURI.create(input)) val graph = makeGraph(triplesRDD) val pagerank = graph.pageRank(0.00001).vertices diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala index 6ec7be9..2b71629 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleOps.scala @@ -1,14 +1,12 @@ package net.sansa_stack.examples.spark.rdf -import java.io.File -import scala.collection.mutable -import org.apache.spark.sql.SparkSession -import net.sansa_stack.rdf.spark.model.JenaSparkRDDOps -import org.apache.jena.graph.Node_URI -import net.sansa_stack.rdf.spark.model.TripleRDD -import org.apache.jena.graph.Node_Literal -import org.apache.jena.sparql.util.NodeFactoryExtra +import java.net.{URI => JavaURI} + import net.sansa_stack.rdf.spark.io.NTripleReader +import net.sansa_stack.rdf.spark.model.{JenaSparkRDDOps, TripleRDD} +import org.apache.spark.sql.SparkSession + +import scala.collection.mutable object TripleOps { @@ -44,8 +42,8 @@ object TripleOps { val ops = JenaSparkRDDOps(sparkSession.sparkContext) import ops._ - val triplesRDD = NTripleReader.load(sparkSession, new File(input)) - + val triplesRDD = NTripleReader.load(sparkSession, JavaURI.create(input)) + val graph: TripleRDD = triplesRDD //Triples filtered by subject ( "http://dbpedia.org/resource/Charles_Dickens" ) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleReader.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleReader.scala index c67ffbd..e54d003 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleReader.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleReader.scala @@ -1,9 +1,11 @@ package net.sansa_stack.examples.spark.rdf -import java.io.File -import scala.collection.mutable -import org.apache.spark.sql.SparkSession +import java.net.URI + import net.sansa_stack.rdf.spark.io.NTripleReader +import org.apache.spark.sql.SparkSession + +import scala.collection.mutable object TripleReader { @@ -35,7 +37,7 @@ object TripleReader { .appName("Triple reader example (" + input + ")") .getOrCreate() - val triplesRDD = NTripleReader.load(sparkSession, new File(input)) + val triplesRDD = NTripleReader.load(sparkSession, URI.create(input)) triplesRDD.take(5).foreach(println(_)) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleWriter.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleWriter.scala index 6e20abd..f8f56b4 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleWriter.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/TripleWriter.scala @@ -1,6 +1,8 @@ package net.sansa_stack.examples.spark.rdf import java.io.File +import java.net.URI + import scala.collection.mutable import org.apache.spark.sql.SparkSession import net.sansa_stack.rdf.spark.io.NTripleReader @@ -36,7 +38,7 @@ object TripleWriter { .appName("Triple writer example (" + input + ")") .getOrCreate() - val triplesRDD = NTripleReader.load(sparkSession, new File(input)) + val triplesRDD = NTripleReader.load(sparkSession, URI.create(input)) triplesRDD.saveAsTextFile(output) From 6dd895694fc7c942f2d9fafe3233e4cfd2edc8c2 Mon Sep 17 00:00:00 2001 From: Lorenz Buehmann Date: Thu, 11 May 2017 15:34:02 +0200 Subject: [PATCH 11/36] Fixes inference problems. --- pom.xml | 6 ++-- .../spark/inference/RDFGraphInference.scala | 36 ++++++++++++------- 2 files changed, 26 insertions(+), 16 deletions(-) diff --git a/pom.xml b/pom.xml index 2058838..a841820 100644 --- a/pom.xml +++ b/pom.xml @@ -177,17 +177,17 @@ ${project.groupId} sansa-inference-parent_${scala.binary.version} - 0.1.0 + 0.1.1-SNAPSHOT ${project.groupId} sansa-inference-spark_${scala.binary.version} - 0.1.0 + 0.1.1-SNAPSHOT ${project.groupId} sansa-inference-flink_${scala.binary.version} - 0.1.0 + 0.1.1-SNAPSHOT diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/inference/RDFGraphInference.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/inference/RDFGraphInference.scala index 0e80eaa..8986ce4 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/inference/RDFGraphInference.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/inference/RDFGraphInference.scala @@ -1,16 +1,16 @@ package net.sansa_stack.examples.spark.inference import java.io.File -import scala.collection.mutable -import org.apache.spark.sql.SparkSession -import net.sansa_stack.rdf.spark.model.JenaSparkRDDOps -import net.sansa_stack.inference.spark.RDFGraphMaterializer -import net.sansa_stack.inference.spark.data.RDFGraphLoader -import net.sansa_stack.inference.spark.forwardchaining.ForwardRuleReasonerRDFS -import net.sansa_stack.inference.rules.ReasoningProfile -import net.sansa_stack.inference.spark.forwardchaining.ForwardRuleReasonerOWLHorst +import java.net.URI + +import net.sansa_stack.inference.rules.{RDFSLevel, ReasoningProfile} import net.sansa_stack.inference.rules.ReasoningProfile._ -import net.sansa_stack.inference.spark.data.RDFGraphWriter +import net.sansa_stack.inference.spark.data.loader.RDFGraphLoader +import net.sansa_stack.inference.spark.data.writer.RDFGraphWriter +import net.sansa_stack.inference.spark.forwardchaining.{ForwardRuleReasonerOWLHorst, ForwardRuleReasonerRDFS} +import org.apache.spark.sql.SparkSession + +import scala.collection.mutable object RDFGraphInference { @@ -19,7 +19,8 @@ object RDFGraphInference { System.err.println( "Usage: RDFGraphInference ReasoningProfile.RDFS + case "rdfs-simple" => ReasoningProfile.RDFS_SIMPLE case "owl-horst" => ReasoningProfile.OWL_HORST } @@ -55,14 +57,22 @@ object RDFGraphInference { .appName(s"RDF Graph Inference ($profile)") .getOrCreate() + // the degree of parallelism + val parallelism = 4 + // load triples from disk - val graph = RDFGraphLoader.loadFromFile(new File(input).getAbsolutePath, sparkSession.sparkContext, 4) + val graph = RDFGraphLoader.loadFromDisk(sparkSession, URI.create(input), parallelism) println(s"|G|=${graph.size()}") // create reasoner val reasoner = profile match { - case RDFS => new ForwardRuleReasonerRDFS(sparkSession.sparkContext) + case RDFS => new ForwardRuleReasonerRDFS(sparkSession.sparkContext, parallelism) + case RDFS_SIMPLE => + val r = new ForwardRuleReasonerRDFS(sparkSession.sparkContext, parallelism) + r.level = RDFSLevel.SIMPLE + r case OWL_HORST => new ForwardRuleReasonerOWLHorst(sparkSession.sparkContext) + case RDFS => new ForwardRuleReasonerRDFS(sparkSession.sparkContext) } // compute inferred graph @@ -70,7 +80,7 @@ object RDFGraphInference { println(s"|G_inferred|=${inferredGraph.size()}") // write triples to disk - RDFGraphWriter.writeGraphToFile(inferredGraph, new File(output).getAbsolutePath) + RDFGraphWriter.writeToDisk(inferredGraph, output) sparkSession.stop } From f10197914dac41fdfce16a2c3085383ee1d6ddcb Mon Sep 17 00:00:00 2001 From: Gezim Date: Fri, 12 May 2017 00:02:48 +0200 Subject: [PATCH 12/36] Eliminating IncompatibleClassChangeError by using a different version of scala logging, fixed #9 --- pom.xml | 10 ++++++++-- sansa-examples-flink/pom.xml | 14 ++++++++++---- sansa-examples-spark/pom.xml | 11 ++++++++--- 3 files changed, 26 insertions(+), 9 deletions(-) diff --git a/pom.xml b/pom.xml index 2058838..5c03be7 100644 --- a/pom.xml +++ b/pom.xml @@ -130,8 +130,14 @@ com.typesafe.scala-logging - scala-logging-slf4j_${scala.binary.version} - 2.1.2 + scala-logging_${scala.binary.version} + 3.5.0 + + + + com.github.scopt + scopt_${scala.binary.version} + 3.5.0 diff --git a/sansa-examples-flink/pom.xml b/sansa-examples-flink/pom.xml index 854c8a7..c24fb2f 100644 --- a/sansa-examples-flink/pom.xml +++ b/sansa-examples-flink/pom.xml @@ -13,7 +13,7 @@ - + ${project.groupId} @@ -26,9 +26,9 @@ ${project.groupId} sansa-inference-flink_${scala.binary.version} - + - + @@ -55,7 +55,13 @@ com.typesafe.scala-logging - scala-logging-slf4j_${scala.binary.version} + scala-logging_${scala.binary.version} + + + + + com.github.scopt + scopt_${scala.binary.version} diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index 79649bb..33d14a8 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -91,8 +91,13 @@ com.typesafe.scala-logging - scala-logging-slf4j_${scala.binary.version} - 2.1.2 + scala-logging_${scala.binary.version} + + + + + com.github.scopt + scopt_${scala.binary.version} @@ -243,7 +248,7 @@ false + implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" /> From 6b4db7e7ed1730926d906b75b28521c7cf4400ae Mon Sep 17 00:00:00 2001 From: Gezim Date: Fri, 12 May 2017 14:33:29 +0200 Subject: [PATCH 13/36] Added latest ML layer dependency which closes #8, closes #11 --- pom.xml | 2 +- .../spark/ml/clustering/RDFByModularityClustering.scala | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pom.xml b/pom.xml index 5c03be7..5377aad 100644 --- a/pom.xml +++ b/pom.xml @@ -200,7 +200,7 @@ ${project.groupId} sansa-ml-spark - 0.1.0 + 0.1.1-SNAPSHOT diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala index c48d5cc..b78b2f1 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFByModularityClustering.scala @@ -5,7 +5,7 @@ import org.apache.spark.sql.SparkSession import org.apache.log4j.{ Level, Logger } import net.sansa_stack.ml.spark.clustering.{ RDFByModularityClustering => RDFByModularityClusteringAlg } -object RDFByModularityClusteringExample { +object RDFByModularityClustering { def main(args: Array[String]) = { if (args.length < 3) { From 8decd05346e47fe8fe8758208c76112142157cec Mon Sep 17 00:00:00 2001 From: Claus Stadler Date: Sat, 13 May 2017 14:49:47 +0200 Subject: [PATCH 14/36] fixed package names --- pom.xml | 2 +- .../net/sansa_stack/examples/spark/query/Sparklify.scala | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/pom.xml b/pom.xml index 847904b..1148773 100644 --- a/pom.xml +++ b/pom.xml @@ -175,7 +175,7 @@ ${project.groupId} sansa-query-spark-bundle - 0.1.0 + 0.1.1-SNAPSHOT diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala index d2a4d76..d04a6b2 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala @@ -2,10 +2,10 @@ package net.sansa_stack.examples.spark.query import java.net.URI -import net.sansa_stack.query.spark.server.SparqlifyUtils3 import net.sansa_stack.rdf.spark.io.NTripleReader import net.sansa_stack.rdf.spark.partition.core.RdfPartitionUtilsSpark -import net.sansa_stack.rdf.spark.sparqlify.QueryExecutionFactorySparqlifySpark +import net.sansa_stack.query.spark.sparqlify.QueryExecutionFactorySparqlifySpark +import net.sansa_stack.query.spark.sparqlify.SparqlifyUtils3 import org.aksw.jena_sparql_api.server.utils.FactoryBeanSparqlServer import org.apache.spark.sql.SparkSession @@ -58,4 +58,4 @@ object Sparklify { } -} \ No newline at end of file +} From 6cb821bfc1a79bde6fc8b90a85cc6c05b1ee5b1e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lorenz=20B=C3=BChmann?= Date: Mon, 15 May 2017 11:09:29 +0200 Subject: [PATCH 15/36] Update Sparklify.scala Fixed bug with Kryo serializer and outdated package name. --- .../scala/net/sansa_stack/examples/spark/query/Sparklify.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala index d04a6b2..e01f26a 100644 --- a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/query/Sparklify.scala @@ -43,7 +43,7 @@ object Sparklify { .config("spark.serializer", "org.apache.spark.serializer.KryoSerializer") .config("spark.kryo.registrator", String.join(", ", "net.sansa_stack.rdf.spark.io.JenaKryoRegistrator", - "net.sansa_stack.rdf.spark.sparqlify.KryoRegistratorSparqlify")) + "net.sansa_stack.query.spark.sparqlify.KryoRegistratorSparqlify")) .appName("Sparklify example (" + input + ")") .getOrCreate() From 94cf5fecc06c506e4a8622baaa540657c8948708 Mon Sep 17 00:00:00 2001 From: Nilesh Chakraborty Date: Mon, 15 May 2017 17:25:46 +0200 Subject: [PATCH 16/36] Add dependency versions, fixes #14 --- sansa-examples-spark/pom.xml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index b944ea3..5253dd3 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -46,6 +46,7 @@ ${project.groupId} sansa-rdf-spark-bundle + 0.1.1-SNAPSHOT @@ -54,24 +55,28 @@ ${project.groupId} sansa-owl-spark + 0.1.1-SNAPSHOT ${project.groupId} sansa-inference-spark_${scala.binary.version} + 0.1.1-SNAPSHOT ${project.groupId} sansa-query-spark-bundle + 0.1.1-SNAPSHOT ${project.groupId} sansa-ml-spark + 0.1.1-SNAPSHOT From 70a353fc2e06c8e05cd551d6faa5ebb89fbf419a Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Fri, 9 Jun 2017 17:30:29 +0200 Subject: [PATCH 17/36] Bumped to new release version --- pom.xml | 4 ++-- sansa-examples-flink/pom.xml | 2 +- sansa-examples-spark/pom.xml | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/pom.xml b/pom.xml index 1148773..ba3d537 100644 --- a/pom.xml +++ b/pom.xml @@ -4,7 +4,7 @@ 4.0.0 net.sansa-stack sansa-examples-parent - 2016-12 + 2017-06-SNAPSHOT pom SANSA-Examples - Parent SANSA examples @@ -14,7 +14,7 @@ http://sda.tech/ - 2016 + 2017 http://sansa-stack.net/ diff --git a/sansa-examples-flink/pom.xml b/sansa-examples-flink/pom.xml index c24fb2f..5858d7c 100644 --- a/sansa-examples-flink/pom.xml +++ b/sansa-examples-flink/pom.xml @@ -5,7 +5,7 @@ sansa-examples-parent net.sansa-stack - 2016-12 + 2017-06-SNAPSHOT sansa-examples-flink SANSA Examples - Apache Flink diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index 5253dd3..bdcff76 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -5,7 +5,7 @@ sansa-examples-parent net.sansa-stack - 2016-12 + 2017-06-SNAPSHOT sansa-examples-spark SANSA Examples - Apache Spark From b36d93e053562309e0fc1d47fc07c2c4876fc5b5 Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Fri, 9 Jun 2017 17:33:23 +0200 Subject: [PATCH 18/36] Spark 2.1.1, Flink 1.3.0 and Jena 3.1.1 --- pom.xml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pom.xml b/pom.xml index ba3d537..37677b4 100644 --- a/pom.xml +++ b/pom.xml @@ -58,9 +58,9 @@ UTF-8 2.11.8 2.11 - 2.0.0 - 1.1.3 - 3.1.0 + 2.1.1 + 1.3.0 + 3.1.1 From ffc6e0d1c54e0ad3d834fcdb295cf91207a4c939 Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Fri, 9 Jun 2017 18:33:17 +0200 Subject: [PATCH 19/36] Use 0.1.1-SNAPSHOT for sansa-rdf-flink dep. --- pom.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pom.xml b/pom.xml index 37677b4..dc6519f 100644 --- a/pom.xml +++ b/pom.xml @@ -157,7 +157,7 @@ ${project.groupId} sansa-rdf-flink - 0.1.0 + 0.1.1-SNAPSHOT From 6c545c7e7cd3c92b453905c4c8c66eb9dea58c4e Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Fri, 9 Jun 2017 18:34:41 +0200 Subject: [PATCH 20/36] Added sample data --- .../main/resources/Clustering_sampledata.nt | 13 + .../main/resources/MineRules_sampledata.tsv | 46654 ++++++++++++++++ .../src/main/resources/ont_functional.owl | 100 + .../src/main/resources/ont_manchester.owl | 346 + .../src/main/resources/rdf.nt | 106 + 5 files changed, 47219 insertions(+) create mode 100644 sansa-examples-flink/src/main/resources/Clustering_sampledata.nt create mode 100644 sansa-examples-flink/src/main/resources/MineRules_sampledata.tsv create mode 100644 sansa-examples-flink/src/main/resources/ont_functional.owl create mode 100644 sansa-examples-flink/src/main/resources/ont_manchester.owl create mode 100644 sansa-examples-flink/src/main/resources/rdf.nt diff --git a/sansa-examples-flink/src/main/resources/Clustering_sampledata.nt b/sansa-examples-flink/src/main/resources/Clustering_sampledata.nt new file mode 100644 index 0000000..bc5575e --- /dev/null +++ b/sansa-examples-flink/src/main/resources/Clustering_sampledata.nt @@ -0,0 +1,13 @@ + . + . + . + . + . + . + . + . + . + . + . + . + . \ No newline at end of file diff --git a/sansa-examples-flink/src/main/resources/MineRules_sampledata.tsv b/sansa-examples-flink/src/main/resources/MineRules_sampledata.tsv new file mode 100644 index 0000000..08a25af --- /dev/null +++ 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. + . + . + . + . + . + . + <4163524>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Crown_Prince_of_Saxony,Princess_Caroline_of_Parma>. + <_Duke_of_Nemours,Charles_Amadeus,_Duke_of_Nemours>. + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Hampshire,Hampshire>. + . + . + . + . + . + . + . + . + . + . + . + . + <2642968>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <16_to_Life>. + . + . + . + . + . + . + . + . + . + . + . + <_Jr.,Mexico_City>. + <_Jr.,In_the_Time_of_the_Butterflies_(film)>. + <_Jr.,Novia,_Esposa_y_Amante>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . +<Émilie_Dequenne> . +<Émilie_Dequenne> . +<Émilie_Dequenne> . + . + . + <9_to_5_(Lady_Sovereign_song)>. + . + . + . + . + . + . + . + . + . + <4692337>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <2807595>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Greater_Manchester,Greater_Manchester>. + . + . + . + . + . + . + . + . + . + <_Cheshire,Cheshire>. + . + . + . + <7300207>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Jr.,Shout_(The_Isley_Brothers_song)>. + <_Jr.,It's_Your_Thing>. + <_Jr.,That_Lady,_Pt._1_&_2>. + <_Jr.,Fight_the_Power_(Part_1_&_2)>. + <_Jr.,Luxurious>. + <_Jr.,Between_the_Sheets_(song)>. + <_Jr.,I_Turned_You_On>. + <_Jr.,Don't_Say_Goodnight_(It's_Time_for_Love)>. + <_Jr.,Nobody_but_Me_(The_Human_Beinz_song)>. + <_Jr.,Take_Me_to_the_Next_Phase>. + <_Jr.,I_Wanna_Be_with_You_(The_Isley_Brothers_song)>. + <_Jr.,The_Highways_of_My_Life>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <3127185>. + . + . + . + . + <5575187>. + . + <_Duke_of_Parma,Elias,_Duke_of_Parma>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <1806097>. + . + . + . + . + . + . + . + . + . + . + <_Tasmania,Tasmania>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <1729085>. + . + <1680007>. + . + . + . + . + . + . + . + <1185185>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <2099976>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <2769359>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <1776_(film)>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <1972_(album)>. + . + . + . + . + . + . + . + <_1st_Baron_Stafford,Dorothy_Stafford>. + <_1st_Baron_Stafford,Thomas_Stafford_(c1533-1557)>. + <_1st_Baron_Stafford,Henry_Stafford,_2nd_Baron_Stafford>. + <_1st_Baron_Stafford,Edward_Stafford,_3rd_Baron_Stafford>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <'65_Love_Affair>. + . + . + . + . + . + . + . + <2635862>. + . + . + . + . + . + . + . + . + . + . + <48_Hrs.>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <111_Centoundici>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <2001_Maniacs>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Scalpay,Outer_Hebrides>. + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Southland,Southland_Region>. + . + . + . + <_Queensland,Queensland>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <1337204>. + . + . + . + . + . + . + . + . + . + . + . + . + . + <_North_Yorkshire,North_Yorkshire>. + . + <7301209>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <1901_(song)>. + . + . + . + . + . + <_Saskatchewan,Saskatchewan>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <973564>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <150602>. + . + . + . + . + . + . + <_8th_Duke_of_Beaufort,Henry_Somerset,_9th_Duke_of_Beaufort>. + <_8th_Duke_of_Beaufort,Lord_Arthur_Somerset_(1851–1926)>. + <_8th_Duke_of_Beaufort,Lord_Henry_Somerset>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Harrogate,North_Yorkshire>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <5808859>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Worcestershire,Worcestershire>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <6348893>. + . + . + . + . + . + . + . + . + . + . + . + . + . + <1948_Arab–Israeli_War>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_1st_Baron_Tovey,Legion_of_Merit>. + <_1st_Baron_Tovey,Funchal>. + <_1st_Baron_Tovey,Order_of_Suvorov>. + <_1st_Baron_Tovey,Doctor_of_Civil_Law>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . +<Øystein_Greni> . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Western_Australia,Western_Australia>. + . + . + . + . + . + . + <3149530>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Western_Australia,Western_Australia>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <_Western_Australia,Western_Australia>. + . + . + . + . + <2639160>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <2648286>. + . + . + . + . + . + . + . + . + . + . + . + <4406723>. + . + . + . + <_Western_Australia,Western_Australia>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <2639895>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + <2993024>. + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + --> ${project.groupId} - sansa-owl-spark + sansa-owl-spark_${scala.binary.version} From 4b3a1bd6b611143e2bb64507d68be130e3fa170d Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Sun, 11 Jun 2017 00:17:23 +0200 Subject: [PATCH 28/36] Added sansa-ml-flink dep. --- pom.xml | 7 ++++++- sansa-examples-flink/pom.xml | 4 ++++ .../net/sansa_stack/examples/flink/rdf/TripleOps.scala | 8 ++++---- sansa-examples-spark/pom.xml | 2 +- 4 files changed, 15 insertions(+), 6 deletions(-) diff --git a/pom.xml b/pom.xml index 8270895..9c8837c 100644 --- a/pom.xml +++ b/pom.xml @@ -200,7 +200,12 @@ ${project.groupId} - sansa-ml-spark + sansa-ml-spark_${scala.binary.version} + ${sansa.version} + + + ${project.groupId} + sansa-ml-flink_${scala.binary.version} ${sansa.version} diff --git a/sansa-examples-flink/pom.xml b/sansa-examples-flink/pom.xml index 37ca3db..2688cb1 100644 --- a/sansa-examples-flink/pom.xml +++ b/sansa-examples-flink/pom.xml @@ -33,6 +33,10 @@ + + ${project.groupId} + sansa-ml-flink_${scala.binary.version} + diff --git a/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/rdf/TripleOps.scala b/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/rdf/TripleOps.scala index fd2013f..562d123 100644 --- a/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/rdf/TripleOps.scala +++ b/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/rdf/TripleOps.scala @@ -7,13 +7,12 @@ import org.apache.flink.api.scala._ object TripleOps { def main(args: Array[String]) { - /* if (args.length < 1) { + if (args.length < 1) { System.err.println( "Usage: Triple Ops ") System.exit(1) - }*/ - - val input = "src/main/resources/rdf.nt" //args(0) // + } + val input = args(0) // "src/main/resources/rdf.nt" val optionsList = args.drop(1).map { arg => arg.dropWhile(_ == '-').split('=') match { case Array(opt, v) => (opt -> v) @@ -30,6 +29,7 @@ object TripleOps { println("======================================") val env = ExecutionEnvironment.getExecutionEnvironment + val rdfgraph = RDFGraphLoader.loadFromFile(input, env) rdfgraph.triples.collect().take(4).foreach(println(_)) //Triples filtered by subject ( "http://dbpedia.org/resource/Charles_Dickens" ) diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index 6d3f0a8..90c8301 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -71,7 +71,7 @@ ${project.groupId} - sansa-ml-spark + sansa-ml-spark_${scala.binary.version} From 5d5cc45753ac4d40da47f189add0ed58e28381d6 Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Sun, 11 Jun 2017 00:18:59 +0200 Subject: [PATCH 29/36] Added RDFByModularityClustering example for Flink --- .../RDFByModularityClustering.scala | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/ml/clustering/RDFByModularityClustering.scala diff --git a/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/ml/clustering/RDFByModularityClustering.scala b/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/ml/clustering/RDFByModularityClustering.scala new file mode 100644 index 0000000..d1b3aef --- /dev/null +++ b/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/ml/clustering/RDFByModularityClustering.scala @@ -0,0 +1,37 @@ +package net.sansa_stack.examples.flink.ml.clustering +import scala.collection.mutable +import net.sansa_stack.ml.flink.clustering.{ RDFByModularityClustering => RDFByModularityClusteringAlg } +import org.apache.flink.api.scala.ExecutionEnvironment +import org.apache.flink.api.scala._ + +object RDFByModularityClustering { + def main(args: Array[String]) { + if (args.length < 3) { + System.err.println( + "Usage: RDFByModularityClustering ") + System.exit(1) + } + val graphFile = args(0) //"src/main/resources/Clustering_sampledata.nt" + val outputFile = args(1) //"src/main/resources/output" + val numIterations = args(2).toInt // 5 + val optionsList = args.drop(3).map { arg => + arg.dropWhile(_ == '-').split('=') match { + case Array(opt, v) => (opt -> v) + case _ => throw new IllegalArgumentException("Invalid argument: " + arg) + } + } + val options = mutable.Map(optionsList: _*) + + options.foreach { + case (opt, _) => throw new IllegalArgumentException("Invalid option: " + opt) + } + println("============================================") + println("| RDF By Modularity Clustering example |") + println("============================================") + + val env = ExecutionEnvironment.getExecutionEnvironment + + RDFByModularityClusteringAlg(env, numIterations, graphFile, outputFile) + + } +} \ No newline at end of file From aec0227257989350122ee80d1396b1916ba1a80b Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Sun, 11 Jun 2017 22:44:53 +0200 Subject: [PATCH 30/36] Added BorderFlow_Sample data --- .../src/main/resources/BorderFlow_Sample1.txt | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 sansa-examples-spark/src/main/resources/BorderFlow_Sample1.txt diff --git a/sansa-examples-spark/src/main/resources/BorderFlow_Sample1.txt b/sansa-examples-spark/src/main/resources/BorderFlow_Sample1.txt new file mode 100644 index 0000000..908aa2f --- /dev/null +++ b/sansa-examples-spark/src/main/resources/BorderFlow_Sample1.txt @@ -0,0 +1,10 @@ +52 1412 +53 2542 +48 52 +47 2385 +46 46 +48 1412 +48 46 +4315 48 +481 1412 +1412 52 From e8a9111c474494b6a5e7ae8619b123e4a8179f67 Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Sun, 11 Jun 2017 22:45:59 +0200 Subject: [PATCH 31/36] Added BorderFlowClustering example for Spark --- .../ml/clustering/BorderFlowClustering.scala | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/BorderFlowClustering.scala diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/BorderFlowClustering.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/BorderFlowClustering.scala new file mode 100644 index 0000000..0cf0878 --- /dev/null +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/BorderFlowClustering.scala @@ -0,0 +1,41 @@ +package net.sansa_stack.examples.spark.ml.clustering + +import scala.collection.mutable +import org.apache.spark.sql.SparkSession +import org.apache.log4j.{ Level, Logger } +import net.sansa_stack.ml.spark.clustering.BorderFlow + +object BorderFlowClustering { + def main(args: Array[String]) = { + if (args.length < 1) { + System.err.println( + "Usage: BorderFlow ") + System.exit(1) + } + val input = args(0) //"src/main/resources/BorderFlow_Sample1.txt" + val optionsList = args.drop(1).map { arg => + arg.dropWhile(_ == '-').split('=') match { + case Array(opt, v) => (opt -> v) + case _ => throw new IllegalArgumentException("Invalid argument: " + arg) + } + } + val options = mutable.Map(optionsList: _*) + + options.foreach { + case (opt, _) => throw new IllegalArgumentException("Invalid option: " + opt) + } + println("============================================") + println("| Border Flow example |") + println("============================================") + + val spark = SparkSession.builder + .master("local[*]") + .appName(" BorderFlow example (" + input + ")") + .getOrCreate() + Logger.getRootLogger.setLevel(Level.ERROR) + + BorderFlow(spark, input) + + spark.stop + } +} \ No newline at end of file From 4bdda74996a78f1e60cfe40ec05758465adbfaac Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Mon, 12 Jun 2017 13:37:09 +0200 Subject: [PATCH 32/36] Added RDFGraphPIClustering example for Spark --- sansa-examples-spark/pom.xml | 5 ++ .../ml/clustering/RDFGraphPIClustering.scala | 60 +++++++++++++++++++ 2 files changed, 65 insertions(+) create mode 100644 sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFGraphPIClustering.scala diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index 90c8301..d50d01c 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -31,6 +31,11 @@ spark-sql_${scala.binary.version} ${spark.version} + + org.apache.spark + spark-mllib_${scala.binary.version} + ${spark.version} + diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFGraphPIClustering.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFGraphPIClustering.scala new file mode 100644 index 0000000..bb572ed --- /dev/null +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/ml/clustering/RDFGraphPIClustering.scala @@ -0,0 +1,60 @@ +package net.sansa_stack.examples.spark.ml.clustering + +import scala.collection.mutable +import org.apache.spark.sql.SparkSession +import org.apache.log4j.{ Level, Logger } +import org.apache.spark.graphx.GraphLoader +import net.sansa_stack.ml.spark.clustering.{ RDFGraphPICClustering => RDFGraphPICClusteringAlg } + +object RDFGraphPIClustering { + def main(args: Array[String]) = { + if (args.length < 3) { + System.err.println( + "Usage: RDFGraphPIClustering ") + System.exit(1) + } + val input = args(0) //"src/main/resources/BorderFlow_Sample1.txt" + val k = args(1).toInt + val numIterations = args(2).toInt + val optionsList = args.drop(3).map { arg => + arg.dropWhile(_ == '-').split('=') match { + case Array(opt, v) => (opt -> v) + case _ => throw new IllegalArgumentException("Invalid argument: " + arg) + } + } + val options = mutable.Map(optionsList: _*) + + options.foreach { + case (opt, _) => throw new IllegalArgumentException("Invalid option: " + opt) + } + println("============================================") + println("| Power Iteration Clustering example |") + println("============================================") + + val sparkSession = SparkSession.builder + .master("local[*]") + .appName(" Power Iteration Clustering example (" + input + ")") + .getOrCreate() + Logger.getRootLogger.setLevel(Level.ERROR) + + // Load the graph + val graph = GraphLoader.edgeListFile(sparkSession.sparkContext, input) + + val model = RDFGraphPICClusteringAlg(sparkSession, graph, k, numIterations).run() + + val clusters = model.assignments.collect().groupBy(_.cluster).mapValues(_.map(_.id)) + val assignments = clusters.toList.sortBy { case (k, v) => v.length } + val assignmentsStr = assignments + .map { + case (k, v) => + s"$k -> ${v.sorted.mkString("[", ",", "]")}" + }.mkString(",") + val sizesStr = assignments.map { + _._2.size + }.sorted.mkString("(", ",", ")") + println(s"Cluster assignments: $assignmentsStr\ncluster sizes: $sizesStr") + + sparkSession.stop + } + +} \ No newline at end of file From dd0a89a38fa41a7c1f3f0732c9113d2d618e0801 Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Mon, 12 Jun 2017 15:15:50 +0200 Subject: [PATCH 33/36] Added RDFStats example for Spark --- .../examples/spark/rdf/RDFStats.scala | 51 +++++++++++++++++++ 1 file changed, 51 insertions(+) create mode 100644 sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/RDFStats.scala diff --git a/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/RDFStats.scala b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/RDFStats.scala new file mode 100644 index 0000000..aeefa31 --- /dev/null +++ b/sansa-examples-spark/src/main/scala/net/sansa_stack/examples/spark/rdf/RDFStats.scala @@ -0,0 +1,51 @@ +package net.sansa_stack.examples.spark.rdf + +import org.apache.spark.sql.SparkSession +import java.net.URI +import net.sansa_stack.rdf.spark.io.NTripleReader +import scala.collection.mutable +import java.io.File +import net.sansa_stack.rdf.spark.stats.RDFStatistics + +object RDFStats { + def main(args: Array[String]) = { + if (args.length < 2) { + System.err.println( + "Usage: RDF Statistics ") + System.exit(1) + } + val input = args(0)//"src/main/resources/rdf.nt" + val rdf_stats_file = new File(input).getName + val output = args(1) + val optionsList = args.drop(1).map { arg => + arg.dropWhile(_ == '-').split('=') match { + case Array(opt, v) => (opt -> v) + case _ => throw new IllegalArgumentException("Invalid argument: " + arg) + } + } + val options = mutable.Map(optionsList: _*) + + options.foreach { + case (opt, _) => throw new IllegalArgumentException("Invalid option: " + opt) + } + println("======================================") + println("| RDF Statistic example |") + println("======================================") + + val sparkSession = SparkSession.builder + .master("local[*]") + .config("spark.serializer", "org.apache.spark.serializer.KryoSerializer") + .appName("RDF Dataset Statistics example (" + rdf_stats_file + ")") + .getOrCreate() + + val triples = NTripleReader.load(sparkSession, URI.create(input)) + + // compute criterias + val rdf_statistics = RDFStatistics(triples, sparkSession) + val stats = rdf_statistics.run() + rdf_statistics.voidify(stats, rdf_stats_file, output) + + sparkSession.stop + + } +} \ No newline at end of file From 9aff015e5d2025dbdd64490552e940da4bda72cb Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Mon, 12 Jun 2017 15:16:07 +0200 Subject: [PATCH 34/36] Added RDFStats example for Flink --- .../examples/flink/rdf/RDFStats.scala | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/rdf/RDFStats.scala diff --git a/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/rdf/RDFStats.scala b/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/rdf/RDFStats.scala new file mode 100644 index 0000000..c0d609d --- /dev/null +++ b/sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/rdf/RDFStats.scala @@ -0,0 +1,45 @@ +package net.sansa_stack.examples.flink.rdf + +import scala.collection.mutable +import java.io.File +import org.apache.flink.api.scala.ExecutionEnvironment +import net.sansa_stack.rdf.flink.data.RDFGraphLoader +import net.sansa_stack.rdf.flink.stats.RDFStatistics + +object RDFStats { + def main(args: Array[String]) = { + if (args.length < 2) { + System.err.println( + "Usage: RDF Statistics ") + System.exit(1) + } + val input = args(0) //"src/main/resources/rdf.nt" + val rdf_stats_file = new File(input).getName + val output = args(1) + val optionsList = args.drop(1).map { arg => + arg.dropWhile(_ == '-').split('=') match { + case Array(opt, v) => (opt -> v) + case _ => throw new IllegalArgumentException("Invalid argument: " + arg) + } + } + val options = mutable.Map(optionsList: _*) + + options.foreach { + case (opt, _) => throw new IllegalArgumentException("Invalid option: " + opt) + } + println("======================================") + println("| RDF Statistic example |") + println("======================================") + + val env = ExecutionEnvironment.getExecutionEnvironment + + val rdfgraph = RDFGraphLoader.loadFromFile(input, env) + + // compute criterias + val rdf_statistics = RDFStatistics(rdfgraph, env) + val stats = rdf_statistics.run() + rdf_statistics.voidify(stats, rdf_stats_file, output) + + } + +} \ No newline at end of file From 9601d4cd947cae0ff2b18b5f1a294f88e0ea98ee Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Wed, 14 Jun 2017 18:55:53 +0200 Subject: [PATCH 35/36] Added SANSA v0.2.0 layers dep. --- pom.xml | 10 +++++----- sansa-examples-flink/pom.xml | 2 +- sansa-examples-spark/pom.xml | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-) diff --git a/pom.xml b/pom.xml index 9c8837c..9a1bc76 100644 --- a/pom.xml +++ b/pom.xml @@ -4,7 +4,7 @@ 4.0.0 net.sansa-stack sansa-examples-parent - 2017-06-SNAPSHOT + 2017-06 pom SANSA-Examples - Parent SANSA examples @@ -61,7 +61,7 @@ 2.1.1 1.3.0 3.1.1 - 0.1.1-SNAPSHOT + 0.2.0 @@ -151,13 +151,13 @@ ${project.groupId} - sansa-rdf-spark-bundle + sansa-rdf-spark-bundle_${scala.binary.version} ${sansa.version} ${project.groupId} - sansa-rdf-flink + sansa-rdf-flink_${scala.binary.version} ${sansa.version} @@ -175,7 +175,7 @@ ${project.groupId} - sansa-query-spark-bundle + sansa-query-spark-bundle_${scala.binary.version} ${sansa.version} diff --git a/sansa-examples-flink/pom.xml b/sansa-examples-flink/pom.xml index 2688cb1..56a23d1 100644 --- a/sansa-examples-flink/pom.xml +++ b/sansa-examples-flink/pom.xml @@ -15,7 +15,7 @@ ${project.groupId} - sansa-rdf-flink + sansa-rdf-flink_${scala.binary.version} diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index d50d01c..f3c646f 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -50,7 +50,7 @@ 0.1.0-SNAPSHOT --> ${project.groupId} - sansa-rdf-spark-bundle + sansa-rdf-spark-bundle_${scala.binary.version} @@ -70,7 +70,7 @@ ${project.groupId} - sansa-query-spark-bundle + sansa-query-spark-bundle_${scala.binary.version} From 414ded14c0082e9288e3492dd8282275558a088d Mon Sep 17 00:00:00 2001 From: Gezim Sejdiu Date: Wed, 14 Jun 2017 19:20:03 +0200 Subject: [PATCH 36/36] Bumped to 2017-06 version --- pom.xml | 2 +- sansa-examples-flink/pom.xml | 6 +++--- sansa-examples-spark/pom.xml | 6 +++--- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/pom.xml b/pom.xml index 9a1bc76..11cb413 100644 --- a/pom.xml +++ b/pom.xml @@ -3,7 +3,7 @@ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> 4.0.0 net.sansa-stack - sansa-examples-parent + sansa-examples-parent_2.11 2017-06 pom SANSA-Examples - Parent diff --git a/sansa-examples-flink/pom.xml b/sansa-examples-flink/pom.xml index 56a23d1..e4c9c4a 100644 --- a/sansa-examples-flink/pom.xml +++ b/sansa-examples-flink/pom.xml @@ -3,11 +3,11 @@ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> 4.0.0 - sansa-examples-parent + sansa-examples-parent_2.11 net.sansa-stack - 2017-06-SNAPSHOT + 2017-06 - sansa-examples-flink + sansa-examples-flink_2.11 SANSA Examples - Apache Flink SANSA examples for Apache Flink diff --git a/sansa-examples-spark/pom.xml b/sansa-examples-spark/pom.xml index f3c646f..8bec14f 100644 --- a/sansa-examples-spark/pom.xml +++ b/sansa-examples-spark/pom.xml @@ -3,11 +3,11 @@ 4.0.0 - sansa-examples-parent + sansa-examples-parent_2.11 net.sansa-stack - 2017-06-SNAPSHOT + 2017-06 - sansa-examples-spark + sansa-examples-spark_2.11 SANSA Examples - Apache Spark SANSA Examples for Apache Spark