ODTbrain provides image reconstruction algorithms for Optical Diffraction Tomography with a Born and Rytov Approximation-based Inversion to compute the refractive index (n) in 2D and in 3D.
The documentation, including the reference and examples, is available at odtbrain.readthedocs.io.
pip install odtbrain
After cloning into odtbrain, create a virtual environment:
virtualenv --system-site-packages env source env/bin/activate
Install ODTbrain in editable mode:
pip install -e .
Running an example:
python examples/backprop_from_fdtd_2d.py
Running tests:
pip install pytest pytest tests