main.yml

name: Build and publish the package to PyPi registry

env:
  PACKAGE_NAME: cluster_conformers

on: [ push ]

jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 4
      matrix:
        python-version: [3.10.15]

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version}}
    - name: Install dependencies
      run: |
        pip install -r requirements.txt
        pip install pytest pytest-cov pre-commit
        pre-commit install
    - name: Run pre-commit
      run: pre-commit run --all
    - name: Run Tests
      run: |
        coverage run -m pytest --junitxml=report.xml
        coverage xml -o coverage/cobertura-coverage.xml
        coverage report -m
    - name: Upload coverage to Codecov
      if: github.ref == 'refs/heads/main'
      uses: codecov/codecov-action@v1
      with:
        file: ./coverage/cobertura-coverage.xml
        flags: unittests
        name: codecov-${{ env.PACKAGE_NAME }}
        token: ${{ secrets.CODECOV_TOKEN }}
        fail_ci_if_error: true
    - name: Create distribution
      if: github.ref == 'refs/heads/main'
      run: |
        pip install wheel
        python setup.py sdist bdist_wheel
    - name: Upload artifact for publish job
      if: github.ref == 'refs/heads/main'
      uses: actions/upload-artifact@v3
      with:
        name: ${{ env.PACKAGE_NAME }}-app
        path: dist/

  documentation:
    if: github.ref == 'refs/heads/main'
    runs-on: ubuntu-latest
    strategy:
        matrix:
            python-version: [3.10.15]
    needs: build

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version}}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version}}
    - name: Install dependencies
      run: |
        pip install -r requirements.txt
        pip install -r dev-requirements.txt
        pip install -e ".[docs]"
    - name: Build documentation
      run: |
        cd doc
        make html
    - name: Deploy pages
      uses: peaceiris/actions-gh-pages@v3
      with:
        github_token: ${{ secrets.GITHUB_TOKEN }}
        publish_dir: ./doc/_build/html


  publish:
    if: github.ref == 'refs/heads/main'
    runs-on: ubuntu-latest
    needs: build

    steps:
    - name: Download artifact from build job
      uses: actions/download-artifact@v3
      with:
        name: ${{ env.PACKAGE_NAME }}-app
        path: dist/
    - name: Publish package
      uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
      with:
        user: ${{ secrets.PYPI_USERNAME }}
        password: ${{ secrets.PYPI_PASSWORD }}
      continue-on-error: false