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kmerPrefixCounter #10

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Alaric-S opened this issue Aug 28, 2019 · 0 comments

Alaric-S commented Aug 28, 2019

kmerPrefixCounter seems to run without error, but writes an empty output file.

kmerPrefixCounter -i test.int -k 20 -o test-1 -l 1 -f 0
...
Mems_allowed_list: 0-1
voluntary_ctxt_switches: 5
nonvoluntary_ctxt_switches: 335
kmer_ct: 364633 compute time: 10.5024 write_time: 0.167927
SUCCESS!

ls -l
-rw-r--r--. 1 user group 0 Aug 28 10:43 test.0

The test.int file has 77 nucleotide sequences. Headers are NCBI Taxonomy IDs (">10253", ">126794", etc.).

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