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"if you used the stock double-echo gradient echo field map sequence (method 1), you'll have two series. The first will contain two magnitude images, one for each echo. The second series will contain a single phase difference image, a subtraction of the two phase images from each echo."
This is indeed what we get from the SIemens sequence; one folder containing two echo time images, and one folder containing some type of phase-map-looking image.
Started work on this on the PhaseMap branch
This site seems useful:
This is indeed what we get from the SIemens sequence; one folder containing two echo time images, and one folder containing some type of phase-map-looking image.
Here's another useful resource
and
https://github.com/fithisux/FSL/blob/fsl-5.0.9/src/fugue/fsl_prepare_fieldmap
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