SV calling on chrMT

[marc-sturm]

Hi,

I would like to perform SV calling on human mitochondria.
Since this chromosme is not diploid, the germline mode does not really fit.

I read the documentation but found no instructions for mitochondria specifically.
Would you use the "Tumor-Only Analysis" for chrMT?
Or would a different SV caller be better?

Thanks,
Marc