From c5b249f8dfb24b94c4e20d21a205f47530d3836b Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Wed, 27 Sep 2023 21:17:20 +0200
Subject: [PATCH 01/12] MAINT: autoupdate pre-commit

---
 .pre-commit-config.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 76fd954..193e2cb 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -26,7 +26,7 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/psf/black
-    rev: 23.7.0
+    rev: 23.9.1
     hooks:
       - id: black
 
@@ -45,7 +45,7 @@ repos:
       - id: isort
 
   - repo: https://github.com/cmhughes/latexindent.pl
-    rev: V3.22.2
+    rev: V3.23.2
     hooks:
       - id: latexindent
         args:
@@ -82,6 +82,6 @@ repos:
             metadata.vscode
 
   - repo: https://github.com/pre-commit/mirrors-prettier
-    rev: v3.0.2
+    rev: v3.0.3
     hooks:
       - id: prettier

From a9e64bfe85d9bac23e0ef28c32361cacd0095c50 Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Wed, 27 Sep 2023 21:20:47 +0200
Subject: [PATCH 02/12] DX: format notebooks with official hook for `black`

---
 .pre-commit-config.yaml | 4 +++-
 pyproject.toml          | 2 +-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 193e2cb..3fac6ca 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -29,6 +29,9 @@ repos:
     rev: 23.9.1
     hooks:
       - id: black
+      - id: black-jupyter
+        args: [--line-length=85]
+        types_or: [jupyter]
 
   - repo: https://github.com/pre-commit/mirrors-clang-format
     rev: v16.0.6
@@ -54,7 +57,6 @@ repos:
   - repo: https://github.com/nbQA-dev/nbQA
     rev: 1.7.0
     hooks:
-      - id: nbqa-black
       - id: nbqa-isort
 
   - repo: https://github.com/kynan/nbstripout
diff --git a/pyproject.toml b/pyproject.toml
index a7527c1..7dd0f39 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -41,4 +41,4 @@ known_third_party = "THIRDPARTY,sympy"
 profile = "black"
 
 [tool.nbqa.addopts]
-black = ["--line-length=85"]
+isort = ["--line-length=85"]

From b0f356afdc49de3298f163a06da146aee5298fe5 Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Wed, 27 Sep 2023 21:21:41 +0200
Subject: [PATCH 03/12] DOC: make Colab TOC visible by default

---
 .pre-commit-config.yaml | 5 +++++
 docs/widget.ipynb       | 3 +++
 2 files changed, 8 insertions(+)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 3fac6ca..a396523 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -25,6 +25,11 @@ repos:
       - id: mixed-line-ending
       - id: trailing-whitespace
 
+  - repo: https://github.com/ComPWA/repo-maintenance
+    rev: 0.0.198
+    hooks:
+      - id: colab-toc-visible
+
   - repo: https://github.com/psf/black
     rev: 23.9.1
     hooks:
diff --git a/docs/widget.ipynb b/docs/widget.ipynb
index a6262a1..0c49806 100644
--- a/docs/widget.ipynb
+++ b/docs/widget.ipynb
@@ -640,6 +640,9 @@
   }
  ],
  "metadata": {
+  "colab": {
+   "toc_visible": true
+  },
   "kernelspec": {
    "display_name": "Python 3 (ipykernel)",
    "language": "python",

From ba0289aa4860de7380ad740a97ed8028fc281641 Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Sun, 8 Oct 2023 15:47:01 +0200
Subject: [PATCH 04/12] MAINT: autoupdate pre-commit hooks

---
 .pre-commit-config.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index a396523..eb30138 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -9,7 +9,7 @@ repos:
       - id: check-useless-excludes
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
       - id: check-case-conflict
       - id: check-json
@@ -26,7 +26,7 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/ComPWA/repo-maintenance
-    rev: 0.0.198
+    rev: 0.1.0rc1
     hooks:
       - id: colab-toc-visible
 

From c31eccf6580b4d5f157ec19a7a09d633d322b829 Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Sun, 8 Oct 2023 15:47:17 +0200
Subject: [PATCH 05/12] DOC: add Prettier badge

---
 README.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/README.md b/README.md
index 0ee6d23..42e482d 100644
--- a/README.md
+++ b/README.md
@@ -1,5 +1,7 @@
 # Comparison repository for GlueX amplitude models
 
+[![code style: prettier](https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square)](https://github.com/prettier/prettier)
+
 This repository was created during PWA working group meetings for GlueX at Jefferson Lab, July 31st to August 4th, 2023. Live notes for these discussions can be found [here](https://hackmd.io/@QHYjhejHTIWXL2MltV3WNQ/r17prtBo3) on HackMD. Each meeting was organised like a 'hackathon' and the results of these programming sessions can be found on [compwa.github.io/gluex-amplitude](https://compwa.github.io/gluex-amplitude).
 
 The main target for the week was to implement a simple intensity function for two-pseudoscalar system with photo-production:

From 64fac80594d29afeb0d298e7511bf53504a99db2 Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Mon, 9 Oct 2023 12:02:43 +0200
Subject: [PATCH 06/12] DOC: add BSD 3-Clause License file

---
 LICENSE | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)
 create mode 100644 LICENSE

diff --git a/LICENSE b/LICENSE
new file mode 100644
index 0000000..627f124
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,29 @@
+BSD 3-Clause License
+
+Copyright (c) 2021, Common Partial Wave Analysis
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

From d2a5bf17e4707e8af4b5731af00268ee67cea23d Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Mon, 9 Oct 2023 12:05:15 +0200
Subject: [PATCH 07/12] DX: enforce ComPWA developer environment

---
 .editorconfig           |  6 +++--
 .pre-commit-config.yaml | 58 ++++++++++++++++++++++++++++++++++++-----
 .prettierignore         |  1 +
 .taplo.toml             |  3 +++
 .vscode/extensions.json |  8 ++++++
 .vscode/settings.json   | 30 ++++++++++++---------
 pyproject.toml          | 50 ++++++++++++++++++++++++++++++++++-
 7 files changed, 135 insertions(+), 21 deletions(-)

diff --git a/.editorconfig b/.editorconfig
index 3146498..456c8b6 100644
--- a/.editorconfig
+++ b/.editorconfig
@@ -3,12 +3,14 @@ root = true
 [*]
 end_of_line = lf
 indent_size = 2
-indent_style = space
 insert_final_newline = true
 trim_trailing_whitespace = true
 
-[*.{ipynb,md}]
+[*.{c,cc,h,hh,ipynb,md}]
 indent_size = unset
 
 [*.{py,toml}]
 indent_size = 4
+
+[.gitmodules]
+indent_size = unset
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index eb30138..ccdc620 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,8 @@
 ci:
   autoupdate_commit_msg: "MAINT: autoupdate pre-commit hooks"
   autoupdate_schedule: quarterly
+  skip:
+    - taplo
 
 repos:
   - repo: meta
@@ -26,9 +28,27 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/ComPWA/repo-maintenance
-    rev: 0.1.0rc1
+    rev: 0.1.0rc2
     hooks:
       - id: colab-toc-visible
+      - id: check-dev-files
+        args:
+          - --ignore-author
+          - --no-github-actions
+          - --no-gitpod
+          - --no-prettierrc
+          - --no-pypi
+          - --no-ruff
+          - --no-version-branches
+          - --repo-name=gluex-amplitude
+
+  - repo: https://github.com/nbQA-dev/nbQA
+    rev: 1.7.0
+    hooks:
+      - id: nbqa-isort
+      - id: nbqa-pyupgrade
+        args:
+          - --py37-plus
 
   - repo: https://github.com/psf/black
     rev: 23.9.1
@@ -47,6 +67,17 @@ repos:
           - c
           - cuda
 
+  - repo: https://github.com/editorconfig-checker/editorconfig-checker.python
+    rev: 2.7.2
+    hooks:
+      - id: editorconfig-checker
+        name: editorconfig
+        alias: ec
+        exclude: >-
+          (?x)^(
+            .*\.py
+          )$
+
   - repo: https://github.com/PyCQA/isort
     rev: 5.12.0
     hooks:
@@ -59,11 +90,6 @@ repos:
         args:
           - "-y=defaultIndent: '  '"
 
-  - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.0
-    hooks:
-      - id: nbqa-isort
-
   - repo: https://github.com/kynan/nbstripout
     rev: 0.6.1
     hooks:
@@ -74,6 +100,7 @@ repos:
             cell.attachments
             cell.metadata.code_folding
             cell.metadata.id
+            cell.metadata.pycharm
             cell.metadata.user_expressions
             metadata.celltoolbar
             metadata.colab.name
@@ -92,3 +119,22 @@ repos:
     rev: v3.0.3
     hooks:
       - id: prettier
+
+  - repo: https://github.com/asottile/pyupgrade
+    rev: v3.15.0
+    hooks:
+      - id: pyupgrade
+        args:
+          - --py37-plus
+
+  - repo: https://github.com/ComPWA/mirrors-taplo
+    rev: v0.8.1
+    hooks:
+      - id: taplo
+
+  - repo: https://github.com/pappasam/toml-sort
+    rev: v0.23.1
+    hooks:
+      - id: toml-sort
+        args:
+          - --in-place
diff --git a/.prettierignore b/.prettierignore
index fa65608..ea965b8 100644
--- a/.prettierignore
+++ b/.prettierignore
@@ -1 +1,2 @@
 *.ipynb
+LICENSE
diff --git a/.taplo.toml b/.taplo.toml
index bcd3669..0db1df7 100644
--- a/.taplo.toml
+++ b/.taplo.toml
@@ -1,9 +1,12 @@
 [formatting]
+align_comments = false
 align_entries = false
+allowed_blank_lines = 1
 array_auto_collapse = false
 array_auto_expand = true
 array_trailing_comma = true
 column_width = 88
+compact_inline_tables = true
 indent_string = "    "
 reorder_arrays = true
 reorder_keys = true
diff --git a/.vscode/extensions.json b/.vscode/extensions.json
index 8c616cb..81de77a 100644
--- a/.vscode/extensions.json
+++ b/.vscode/extensions.json
@@ -5,6 +5,7 @@
     "editorconfig.editorconfig",
     "esbenp.prettier-vscode",
     "executablebookproject.myst-highlight",
+    "garaioag.garaio-vscode-unwanted-recommendations",
     "github.vscode-github-actions",
     "github.vscode-pull-request-github",
     "james-yu.latex-workshop",
@@ -19,7 +20,14 @@
     "ms-vscode.makefile-tools",
     "ms-vsliveshare.vsliveshare",
     "redhat.vscode-yaml",
+    "stkb.rewrap",
     "tamasfe.even-better-toml",
     "yzhang.markdown-all-in-one"
+  ],
+  "unwantedRecommendations": [
+    "bungcip.better-toml",
+    "davidanson.vscode-markdownlint",
+    "ms-python.mypy-type-checker",
+    "travisillig.vscode-json-stable-stringify"
   ]
 }
diff --git a/.vscode/settings.json b/.vscode/settings.json
index 2d1a8fc..3c4765b 100644
--- a/.vscode/settings.json
+++ b/.vscode/settings.json
@@ -1,5 +1,6 @@
 {
   "[git-commit]": {
+    "editor.rulers": [72],
     "rewrap.wrappingColumn": 72
   },
   "[json]": {
@@ -14,11 +15,14 @@
   "[python]": {
     "editor.codeActionsOnSave": {
       "source.organizeImports": true
-    }
+    },
+    "editor.defaultFormatter": "ms-python.black-formatter",
+    "editor.rulers": [88]
   },
   "[yaml]": {
     "editor.defaultFormatter": "esbenp.prettier-vscode"
   },
+  "black-formatter.importStrategy": "fromEnvironment",
   "editor.formatOnSave": true,
   "git.autofetch": true,
   "git.autoRepositoryDetection": false,
@@ -45,6 +49,16 @@
     }
   ],
   "latex-workshop.latex.tools": [
+    {
+      "args": ["--no-fonts", "%DOC%"],
+      "command": "dvisvgm",
+      "name": "svg"
+    },
+    {
+      "args": ["--output-format=dvi", "%DOC%"],
+      "command": "lualatex",
+      "name": "dvi"
+    },
     {
       "args": [
         "-synctex=1",
@@ -54,17 +68,9 @@
       ],
       "command": "lualatex",
       "name": "pdf"
-    },
-    {
-      "args": ["--output-format=dvi", "%DOC%"],
-      "command": "lualatex",
-      "name": "dvi"
-    },
-    {
-      "args": ["--no-fonts", "%DOC%"],
-      "command": "dvisvgm",
-      "name": "svg"
     }
   ],
-  "livePreview.defaultPreviewPath": "docs/_build/html"
+  "livePreview.defaultPreviewPath": "docs/_build/html",
+  "notebook.gotoSymbols.showAllSymbols": true,
+  "rewrap.wrappingColumn": 88
 }
diff --git a/pyproject.toml b/pyproject.toml
index 7dd0f39..80f3488 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,9 +1,24 @@
-
 [build-system]
 build-backend = "setuptools.build_meta"
 requires = ["setuptools"]
 
 [project]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "Intended Audience :: Education",
+    "Intended Audience :: Science/Research",
+    "Natural Language :: English",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.7",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python",
+    "Topic :: Scientific/Engineering :: Physics",
+    "Topic :: Scientific/Engineering",
+]
 dependencies = [
     "ampform",
     "ipympl",
@@ -14,6 +29,8 @@ dependencies = [
     "sympy",
     "uproot",
 ]
+description = "Investigation of symbolic amplitude models for the GlueX experiment"
+license = {text = "BSD 3-Clause License"}
 name = "gluex-amplitude"
 requires-python = ">=3.7"
 version = "0.0.0"
@@ -36,9 +53,40 @@ sty = [
     "pre-commit",
 ]
 
+[project.readme]
+content-type = "text/markdown"
+file = "README.md"
+
+[tool.black]
+preview = true
+target-version = [
+    "py310",
+    "py311",
+    "py37",
+    "py38",
+    "py39",
+]
+
 [tool.isort]
 known_third_party = "THIRDPARTY,sympy"
 profile = "black"
 
 [tool.nbqa.addopts]
 isort = ["--line-length=85"]
+
+[tool.pyright]
+typeCheckingMode = "strict"
+
+[tool.tomlsort]
+all = false
+ignore_case = true
+in_place = true
+sort_first = [
+    "build-system",
+    "project",
+    "tool.setuptools",
+    "tool.setuptools_scm",
+]
+sort_table_keys = true
+spaces_indent_inline_array = 4
+trailing_comma_inline_array = true

From 2218e3c24d4848245a354df87c0c58718ba86ccb Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 9 Oct 2023 10:05:37 +0000
Subject: [PATCH 08/12] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 script/makeComparison.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/script/makeComparison.py b/script/makeComparison.py
index 20dd578..888b45e 100644
--- a/script/makeComparison.py
+++ b/script/makeComparison.py
@@ -10,7 +10,7 @@
 
 # Load the intensities extracted by print_amplitudes.cc
 intensities = []
-with open(".print_amplitudes.log", "r") as file:
+with open(".print_amplitudes.log") as file:
     for line in file:
         if "INTENSITY =" in line:
             line = re.sub(" +", " ", line.rstrip().lstrip())

From e8d9d7773b26f88df2c003cde6efa455f78aa5ad Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Mon, 9 Oct 2023 12:20:27 +0200
Subject: [PATCH 09/12] FIX: remove `pyright` config

---
 pyproject.toml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 80f3488..6477948 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -74,9 +74,6 @@ profile = "black"
 [tool.nbqa.addopts]
 isort = ["--line-length=85"]
 
-[tool.pyright]
-typeCheckingMode = "strict"
-
 [tool.tomlsort]
 all = false
 ignore_case = true

From 67ecb1bf6f47cfd974ba15c536ef6938a8b563a0 Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Mon, 9 Oct 2023 14:14:59 +0200
Subject: [PATCH 10/12] FIX: update line numbers `index.md`

---
 docs/index.md | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/docs/index.md b/docs/index.md
index 43b7eb9..10d6fe3 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -1,8 +1,8 @@
 # GlueX amplitude model
 
 ```{include} ../README.md
-:start-line: 2
-:end-line: 6
+:start-line: 4
+:end-line: 8
 ```
 
 ```{math}
@@ -16,16 +16,16 @@ I(\Omega,\Phi) = 2\kappa\sum_{k}\left(
 ```
 
 ```{include} ../README.md
-:start-line: 8
-:end-line: 10
+:start-line: 10
+:end-line: 12
 ```
 
 :::{figure} fig/feynman-gluex-two-pseudoscalar.svg
 :::
 
 ```{include} ../README.md
-:start-line: 12
-:end-line: 13
+:start-line: 14
+:end-line: 15
 ```
 
 :::{figure} fig/feynman-gluex-vector-meson.svg

From 416e4cf73f79d6dbd205faeda7e829866b7af95a Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Mon, 9 Oct 2023 14:16:20 +0200
Subject: [PATCH 11/12] MAINT: autoupdate pre-commit config

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index ccdc620..e80736a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -28,7 +28,7 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/ComPWA/repo-maintenance
-    rev: 0.1.0rc2
+    rev: 0.1.0rc3
     hooks:
       - id: colab-toc-visible
       - id: check-dev-files

From 512241d72b9beaabeb5f39ebad3084ca3cfe37cf Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Mon, 9 Oct 2023 17:38:34 +0200
Subject: [PATCH 12/12] MAINT: autoupdate pre-commit config

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e80736a..8891982 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -28,7 +28,7 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/ComPWA/repo-maintenance
-    rev: 0.1.0rc3
+    rev: 0.1.0
     hooks:
       - id: colab-toc-visible
       - id: check-dev-files